Detailed information NTG0568442

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KI611_RS18055
• Genome accession: NZ_CP075185
• Coordinates: 3777104..3777952 (+)
• Length: 282 a.a.
• NCBI ID: WP_226417034.1
• Uniprot ID: -
• Organism: Dechloromonas denitrificans strain 110
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3772104..3782952

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KI611_RS18040 (KI611_17995)	-	3772800..3774071 (+)	1272	WP_226417031.1	HlyC/CorC family transporter	-
KI611_RS18045 (KI611_18000)	pilB	3774148..3775863 (+)	1716	WP_226417032.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KI611_RS18050 (KI611_18005)	pilC	3775878..3777104 (+)	1227	WP_226417033.1	type II secretion system F family protein	Machinery gene
KI611_RS18055 (KI611_18010)	pilD	3777104..3777952 (+)	849	WP_226417034.1	prepilin peptidase	Machinery gene
KI611_RS18060 (KI611_18015)	-	3778023..3778286 (+)	264	WP_226417035.1	FmdB family zinc ribbon protein	-
KI611_RS18065 (KI611_18020)	-	3778286..3778900 (+)	615	WP_226419944.1	DUF502 domain-containing protein	-
KI611_RS18070 (KI611_18025)	aspS	3778918..3780720 (+)	1803	WP_226417036.1	aspartate--tRNA ligase	-
KI611_RS18075 (KI611_18030)	-	3780726..3781088 (+)	363	WP_226417037.1	ribonuclease domain-containing protein	-
KI611_RS18080 (KI611_18035)	-	3781101..3781529 (+)	429	WP_226417038.1	barstar family protein	-
KI611_RS18085 (KI611_18040)	nudB	3781526..3781978 (+)	453	WP_226417039.1	dihydroneopterin triphosphate diphosphatase	-
KI611_RS18090 (KI611_18045)	-	3782047..3782463 (+)	417	WP_226417040.1	Hsp20/alpha crystallin family protein	-

Sequence

Protein

• Length: 282 a.a.
• Molecular weight: 29823.44 Da
• Isoelectric Point: 7.9549

>NTDB_id=568442 KI611_RS18055 WP_226417034.1 3777104..3777952(+) (pilD) [Dechloromonas denitrificans strain 110]
MLPESLGGLAAMAGLLGLCVGSFLNVVIHRLPKMMEQEWQAQCADLRGEPAPTAAALSLAKPRSRCPACGHSITAFENIP
VLSYLLLRGKCSGCNAAISFRYPLIELLTGLLSAYAAWHFGPTIQTVGALALLWSLIALAAIDLDTQLLPDSITLPMLWL
GLAFNIATTYVDLQSAVIGAMAGYLALWSVFWLFKLATGKEGMGYGDFKLLAALGAWLGWSMLPAIILLSSVVGAIVGIS
LIVAARHGRNVPIPFGPYLAAAGGIALFWGPQLTRSYLGLLA

Nucleotide

• Length: 849 bp

>NTDB_id=568442 KI611_RS18055 WP_226417034.1 3777104..3777952(+) (pilD) [Dechloromonas denitrificans strain 110]
ATGCTTCCTGAATCACTGGGCGGCTTGGCTGCCATGGCTGGGCTGCTCGGTTTGTGCGTCGGCAGTTTTCTCAATGTGGT
CATTCATCGCCTGCCCAAGATGATGGAACAGGAGTGGCAGGCTCAATGCGCCGATTTACGGGGTGAGCCTGCGCCGACTG
CGGCAGCGTTGTCGCTGGCCAAGCCGCGCTCCCGCTGTCCGGCTTGCGGACACTCGATTACAGCATTTGAAAACATTCCT
GTCCTAAGTTATCTGTTGCTGCGCGGCAAATGCTCTGGCTGCAACGCCGCGATTTCCTTTCGTTACCCCCTGATCGAACT
TCTGACCGGCCTGTTATCGGCTTACGCGGCTTGGCATTTCGGACCGACGATACAGACGGTCGGTGCGCTGGCTCTGCTCT
GGTCACTGATTGCCCTTGCCGCTATCGACCTCGATACCCAATTGCTCCCCGACAGCATCACGCTCCCTATGCTCTGGCTG
GGCCTGGCCTTCAACATTGCCACCACCTATGTCGACCTTCAGTCTGCCGTGATTGGCGCCATGGCTGGCTATCTCGCGCT
GTGGTCGGTATTCTGGCTATTCAAGCTGGCGACCGGAAAGGAAGGCATGGGCTATGGCGACTTCAAGTTGCTGGCTGCGC
TCGGTGCCTGGCTGGGCTGGTCGATGCTGCCTGCCATCATCCTGCTCTCCTCGGTGGTCGGTGCGATTGTCGGCATCAGC
CTGATCGTTGCCGCCCGCCATGGCCGCAACGTACCGATTCCGTTCGGCCCCTACCTTGCCGCCGCTGGCGGCATTGCCCT
GTTTTGGGGGCCGCAGTTGACCCGCAGCTATCTCGGTTTGCTCGCTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-120)

• Type IV leader peptidase family (Peptidase_A24) (131-239)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.827	96.099	0.546
pilD	Vibrio campbellii strain DS40M4	56.41	96.809	0.546
pilD	Acinetobacter baumannii D1279779	54.317	98.582	0.535
pilD	Acinetobacter nosocomialis M2	53.597	98.582	0.528
pilD	Neisseria gonorrhoeae MS11	52.734	90.78	0.479