Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AVFI_RS13470 Genome accession   NZ_CP092712
Coordinates   2926826..2927929 (-) Length   367 a.a.
NCBI ID   WP_188863545.1    Uniprot ID   -
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2921826..2932929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS13435 (AVFI_13435) - 2922219..2922482 (-) 264 WP_017018070.1 DUF1488 domain-containing protein -
  AVFI_RS13440 (AVFI_13440) aroE 2922482..2923303 (-) 822 WP_065622375.1 shikimate dehydrogenase -
  AVFI_RS13445 (AVFI_13445) - 2923376..2923933 (-) 558 WP_012532755.1 Sua5/YciO/YrdC/YwlC family protein -
  AVFI_RS13450 (AVFI_13450) purE 2924133..2924618 (+) 486 WP_005421516.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AVFI_RS13455 (AVFI_13455) - 2924621..2925732 (+) 1112 Protein_2549 5-(carboxyamino)imidazole ribonucleotide synthase -
  AVFI_RS13460 (AVFI_13460) - 2925770..2926339 (-) 570 WP_005421518.1 type I DNA topoisomerase -
  AVFI_RS13465 (AVFI_13465) - 2926350..2926823 (-) 474 WP_188863544.1 DUF494 family protein -
  AVFI_RS13470 (AVFI_13470) dprA 2926826..2927929 (-) 1104 WP_188863545.1 DNA-processing protein DprA Machinery gene
  AVFI_RS13475 (AVFI_13475) - 2927944..2929014 (-) 1071 WP_188863543.1 LysM peptidoglycan-binding domain-containing protein -
  AVFI_RS13480 (AVFI_13480) def 2929132..2929641 (+) 510 WP_130049249.1 peptide deformylase -
  AVFI_RS13485 (AVFI_13485) fmt 2929712..2930659 (+) 948 WP_188863542.1 methionyl-tRNA formyltransferase -
  AVFI_RS13490 (AVFI_13490) rsmB 2930764..2932044 (+) 1281 WP_054775570.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39674.35 Da        Isoelectric Point: 5.8781

>NTDB_id=567989 AVFI_RS13470 WP_188863545.1 2926826..2927929(-) (dprA) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MSEDHLSAWLTLCFCPRVGGKVMSRLLSVDSVENILQYNNEQLQALGLSSSQITYLKQMGNKQVEACLTWQAKSSDHTIL
PLTDPRYPKLLSEISAPPPVLFVKGDALCLSEPQVAIVGSRNASLEGLDCSKEFARSIVQHNYVVTSGLALGVDGYAHHG
AIEAKGKTIAVLGSGLEKIYPAKHRALAQRVSENGALVSEFRPDTPPRADNFPRRNRIISGLSTGVLVVEAAERSGSLIT
ARYANEQGREVFALPGSIQNPTAQGSNSLIKAGAKLVSSPEDIFDEIGALTECAISHQPSLFDQEVITEQLPFPEVFATV
GSEATPVDIIAERCQMPVHEIMMQLLELELQGFIAAVPGGYIKKRRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=567989 AVFI_RS13470 WP_188863545.1 2926826..2927929(-) (dprA) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATTTCTGAAGATCATCTATCGGCTTGGTTAACTTTATGCTTTTGTCCTAGAGTAGGTGGGAAGGTAATGTCTCGTTTACT
CAGTGTCGATTCAGTTGAAAATATTCTGCAATACAATAATGAGCAGTTACAAGCTTTAGGCTTATCTTCATCTCAAATTA
CTTATTTAAAACAGATGGGGAATAAGCAAGTTGAGGCCTGCTTGACTTGGCAAGCAAAGAGTTCTGATCATACTATCTTG
CCATTAACCGACCCTAGATACCCTAAGTTGTTGTCTGAGATTAGTGCTCCACCTCCTGTACTTTTTGTTAAGGGCGATGC
GTTGTGTTTGTCTGAACCACAAGTTGCGATAGTTGGGAGTAGAAATGCCAGTCTTGAAGGATTAGATTGCTCTAAAGAAT
TTGCTCGCTCAATTGTTCAACATAATTATGTTGTAACCAGTGGTCTTGCGTTAGGTGTGGATGGGTATGCACATCATGGT
GCAATAGAAGCAAAAGGAAAAACCATTGCAGTTCTTGGTTCTGGACTAGAAAAGATATACCCAGCTAAGCATCGAGCCTT
GGCTCAGCGAGTGAGTGAAAATGGCGCCTTGGTTTCTGAGTTTAGACCTGACACACCACCAAGAGCTGATAATTTCCCCA
GGCGAAATAGGATCATTAGTGGACTCTCGACGGGGGTATTGGTTGTTGAAGCTGCTGAGCGTTCAGGATCGCTGATTACA
GCAAGGTATGCTAATGAACAAGGTCGAGAAGTCTTTGCGCTTCCAGGGTCGATTCAAAACCCTACAGCTCAAGGATCAAA
TAGCTTAATTAAAGCAGGAGCAAAACTGGTTTCATCACCAGAAGATATTTTTGATGAAATTGGGGCTTTAACTGAATGTG
CAATATCTCACCAACCGTCCTTATTCGATCAAGAAGTTATCACAGAACAATTGCCATTTCCTGAAGTGTTCGCTACCGTA
GGCAGTGAGGCGACGCCTGTTGATATAATCGCAGAGCGGTGTCAGATGCCTGTACATGAAATCATGATGCAATTACTTGA
ATTAGAGTTGCAAGGTTTCATCGCTGCAGTCCCAGGGGGTTACATTAAAAAGCGGAGGGGCTAG

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(315-360)

DNA recombination-mediator protein A (DNA_processg_A)

(74-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

62.155

98.638

0.613
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

54.447

100

0.55
  dprA Vibrio cholerae strain A1552

54.447

100

0.55
  dprA Glaesserella parasuis strain SC1401

46.113

100

0.469
  dprA Neisseria meningitidis strain C311

38.539

100

0.417
  dprA Neisseria meningitidis MC58

38.539

100

0.417
  dprA Legionella pneumophila strain ERS1305867

42.105

98.365

0.414
  dprA Neisseria gonorrhoeae MS11

37.722

100

0.406
  dprA Neisseria gonorrhoeae strain FA1090

37.468

100

0.403
  dprA Haemophilus influenzae Rd KW20

43.62

91.826

0.401