Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MKR81_RS16160 Genome accession   NZ_CP092682
Coordinates   3508594..3509703 (-) Length   369 a.a.
NCBI ID   WP_240304873.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3503594..3514703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS16130 (MKR81_16130) hemF 3504122..3505039 (-) 918 WP_051119340.1 oxygen-dependent coproporphyrinogen oxidase -
  MKR81_RS16135 (MKR81_16135) - 3505074..3505631 (-) 558 WP_240304870.1 L-threonylcarbamoyladenylate synthase -
  MKR81_RS16140 (MKR81_16140) purE 3505832..3506317 (+) 486 WP_005429815.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  MKR81_RS16145 (MKR81_16145) - 3506322..3507455 (+) 1134 WP_240304871.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  MKR81_RS16150 (MKR81_16150) - 3507520..3508089 (-) 570 WP_240304872.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  MKR81_RS16155 (MKR81_16155) - 3508112..3508591 (-) 480 WP_005429833.1 DUF494 family protein -
  MKR81_RS16160 (MKR81_16160) dprA 3508594..3509703 (-) 1110 WP_240304873.1 DNA-processing protein DprA Machinery gene
  MKR81_RS16165 (MKR81_16165) - 3509687..3510781 (-) 1095 WP_240304874.1 LysM peptidoglycan-binding domain-containing protein -
  MKR81_RS16170 (MKR81_16170) def 3510920..3511438 (+) 519 WP_005450979.1 peptide deformylase -
  MKR81_RS16175 (MKR81_16175) fmt 3511472..3512419 (+) 948 WP_005535506.1 methionyl-tRNA formyltransferase -
  MKR81_RS16180 (MKR81_16180) rsmB 3512500..3513783 (+) 1284 WP_005535508.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39398.00 Da        Isoelectric Point: 5.5790

>NTDB_id=567830 MKR81_RS16160 WP_240304873.1 3508594..3509703(-) (dprA) [Vibrio campbellii strain IFL1]
MTPQNDIDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVQYSTEQLQLLGFTAKQLQAWSQVDKEVDACLTWVAASSHHH
ILTLADALYPPLLKQTVAPPPLLFVKGEASCLSQPQIAMVGSRNASVDGLQHARSFASDLVQHDLIVTSGLALGIDGHAH
DGALLAGGKTIAVLGSGLEQVYPARHRGLGQRVAENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIQNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=567830 MKR81_RS16160 WP_240304873.1 3508594..3509703(-) (dprA) [Vibrio campbellii strain IFL1]
ATGACACCACAAAATGATATTGATCTCGCAGCCTGGTTAAAGCTTAGTTGTTTACCGGGCATCGGTGGGGTCAAGATGAA
TAAGCTGCTCAGTAAAGATACGCCGAGCAATATTGTCCAATATTCCACGGAGCAGCTTCAGCTTTTAGGCTTTACGGCAA
AACAGTTGCAAGCATGGTCGCAGGTCGATAAAGAAGTCGATGCTTGTCTGACTTGGGTTGCAGCATCTTCTCATCATCAT
ATTCTTACGTTGGCGGATGCTTTGTATCCGCCACTTCTCAAACAAACCGTCGCACCGCCTCCTTTACTCTTTGTAAAAGG
AGAGGCGAGCTGTTTGTCTCAACCTCAAATAGCTATGGTTGGCAGCCGTAATGCCAGTGTGGATGGGCTACAACATGCAA
GAAGCTTTGCGTCAGACTTGGTGCAACACGATCTGATCGTCACTAGTGGCTTAGCATTGGGTATTGATGGTCATGCTCAT
GATGGTGCGCTGTTGGCTGGCGGTAAAACCATCGCAGTGCTAGGTTCGGGATTAGAACAAGTGTACCCAGCAAGACACCG
AGGTTTGGGACAGCGAGTGGCCGAAAATGGAGCGCTTGTTTCTGAGTTTCGCCCTGATGCTAAGCCTCGCGCAGAAAACT
TTCCACGGCGTAATCGAATCATCAGTGGTTTGTCACTGGGTGTTTTGGTGGTGGAAGCGGCTGAAAAAAGTGGCTCCTTG
ATTACGGCGCGTTATGCTTTAGAACAAGGTCGAGAAGTTTTCGCTCTGCCAGCTTCGATTAATGCACCCAACGCCAGTGG
CGGTAATCAATTGATTCAGAACGGAGCTTGTCTCGTACAAAATACTCAAGAGGTGCTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(307-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

98.645

100

0.986
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

57.838

100

0.58
  dprA Vibrio cholerae strain A1552

57.838

100

0.58
  dprA Glaesserella parasuis strain SC1401

47.453

100

0.48
  dprA Haemophilus influenzae Rd KW20

44.54

94.309

0.42
  dprA Legionella pneumophila strain ERS1305867

46.201

89.16

0.412
  dprA Neisseria meningitidis strain C311

37.084

100

0.393
  dprA Neisseria meningitidis MC58

37.084

100

0.393
  dprA Neisseria gonorrhoeae MS11

36.176

100

0.379
  dprA Neisseria gonorrhoeae strain FA1090

35.917

100

0.377