Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AZKH_RS17695 Genome accession   NC_020516
Coordinates   3958077..3959312 (+) Length   411 a.a.
NCBI ID   WP_015437159.1    Uniprot ID   H0Q418
Organism   Azoarcus sp. KH32C     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3953077..3964312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AZKH_RS17675 (AZKH_3568) - 3953213..3953974 (-) 762 WP_015437155.1 EI24 domain-containing protein -
  AZKH_RS17680 (AZKH_3569) ffh 3953990..3955348 (-) 1359 WP_015437156.1 signal recognition particle protein -
  AZKH_RS17685 (AZKH_3570) - 3955391..3956218 (+) 828 WP_015437157.1 inner membrane protein YpjD -
  AZKH_RS17690 (AZKH_3571) pilB 3956341..3958059 (+) 1719 WP_015437158.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AZKH_RS17695 (AZKH_3572) pilC 3958077..3959312 (+) 1236 WP_015437159.1 type II secretion system F family protein Machinery gene
  AZKH_RS17700 (AZKH_3574) pilD 3959367..3960218 (+) 852 WP_015437161.1 A24 family peptidase Machinery gene
  AZKH_RS17705 (AZKH_3575) - 3960347..3960610 (+) 264 WP_015437162.1 FmdB family zinc ribbon protein -
  AZKH_RS17710 (AZKH_3576) - 3960626..3961249 (+) 624 WP_041656347.1 DUF502 domain-containing protein -
  AZKH_RS17715 (AZKH_3577) aspS 3961294..3963093 (+) 1800 WP_015437164.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44101.67 Da        Isoelectric Point: 9.6306

>NTDB_id=56719 AZKH_RS17695 WP_015437159.1 3958077..3959312(+) (pilC) [Azoarcus sp. KH32C]
MATTTRGKVAAASGPKEVLYAWEGRDKTGKQVRGEMRASGESVVQATLRRQGVQVSKVKKQSMARGHKITDKDIALFTRQ
LATMMKSGVPLLQAFDIGIKGSSNPSLARLLNDVRTDVETGSSLSQAFSKHPLYFDKLFCNLVAAGEQAGILDGLLDRIA
TYKEKILAIKSKIKSAMFYPIAVIVVAAIVVTVIMLFVVPEFKKVFHSFGADLPAPTLVVIAISDAFVSNWYIVFGALVG
IFMGISASYKRSSAMQIAVDRIVLQAPVVGDIIRKATVARWTRTLSTMFAAGVPLVEALESVGGASGNYVYLTATRQIQT
EVSTGTSLTVAMQNADVFPGMVVQMVSIGEESGQLDSMLGKVSDFYEQEVDDAVAGLSTLLEPLIMVFLGVVIGGLVVAM
YLPIFKLGEVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=56719 AZKH_RS17695 WP_015437159.1 3958077..3959312(+) (pilC) [Azoarcus sp. KH32C]
ATGGCGACCACGACCCGAGGCAAGGTAGCCGCCGCCAGCGGCCCCAAGGAAGTCCTGTACGCATGGGAAGGACGGGACAA
GACCGGCAAGCAGGTGCGCGGGGAAATGCGCGCGAGCGGGGAGTCCGTGGTTCAGGCCACGCTGCGACGCCAGGGCGTCC
AGGTGTCCAAGGTCAAGAAGCAAAGCATGGCCCGCGGTCACAAGATCACCGACAAGGACATTGCGCTCTTTACCCGCCAG
CTGGCGACCATGATGAAATCGGGCGTCCCGCTGCTGCAGGCCTTCGATATCGGCATCAAGGGTTCGAGCAATCCCAGTCT
CGCGCGACTGCTGAATGACGTACGGACCGACGTGGAAACGGGCTCGAGCCTCTCGCAGGCCTTCAGCAAACACCCGCTCT
ATTTCGACAAGCTCTTCTGCAACCTCGTCGCGGCCGGCGAACAGGCCGGTATTCTGGATGGCCTGCTTGACCGCATCGCC
ACCTACAAGGAAAAGATCCTTGCGATCAAGAGCAAGATCAAGTCGGCGATGTTTTACCCGATCGCCGTCATCGTCGTTGC
GGCGATTGTCGTGACGGTGATCATGTTGTTCGTGGTGCCTGAATTCAAGAAGGTTTTCCATAGCTTCGGCGCAGACCTTC
CCGCTCCGACTCTGGTGGTCATTGCGATCTCGGACGCCTTCGTGTCGAACTGGTACATCGTATTCGGCGCACTCGTCGGC
ATCTTCATGGGGATCAGTGCAAGCTACAAACGCTCGAGTGCGATGCAGATTGCAGTTGACCGTATCGTGCTGCAGGCCCC
GGTCGTCGGCGATATCATTCGCAAAGCAACGGTTGCGCGCTGGACGCGAACGCTGTCGACGATGTTCGCGGCAGGCGTCC
CGCTGGTGGAAGCCCTCGAGTCCGTGGGCGGCGCCTCGGGCAACTACGTTTACCTGACTGCGACACGCCAGATTCAGACC
GAGGTCAGCACCGGCACCAGTCTGACGGTCGCCATGCAGAACGCCGATGTGTTTCCGGGCATGGTGGTTCAGATGGTCTC
GATCGGCGAAGAGTCTGGTCAGCTCGATTCGATGCTCGGAAAAGTCTCCGACTTCTATGAGCAGGAAGTCGACGACGCGG
TCGCGGGGCTTTCGACGCTACTCGAACCCCTCATCATGGTGTTCCTCGGCGTCGTGATCGGCGGCCTGGTCGTCGCGATG
TATCTGCCCATCTTCAAACTTGGCGAAGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H0Q418

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

51.605

98.54

0.509
  pilC Pseudomonas stutzeri DSM 10701

52.13

97.08

0.506
  pilG Neisseria gonorrhoeae MS11

50.126

96.594

0.484
  pilG Neisseria meningitidis 44/76-A

49.75

97.324

0.484
  pilC Acinetobacter baylyi ADP1

48.241

96.837

0.467
  pilC Acinetobacter baumannii D1279779

48.111

96.594

0.465
  pilC Vibrio cholerae strain A1552

40.909

96.35

0.394
  pilC Vibrio campbellii strain DS40M4

39.95

98.054

0.392
  pilC Thermus thermophilus HB27

39

97.324

0.38

Multiple sequence alignment