Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AH5611_RS03565 Genome accession   NZ_CP092055
Coordinates   745920..746891 (+) Length   323 a.a.
NCBI ID   WP_000876313.1    Uniprot ID   -
Organism   Staphylococcus aureus strain USA600     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 740920..751891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AH5611_RS03550 (AH5611_000685) nrdI 741990..742388 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  AH5611_RS03555 (AH5611_000686) nrdE 742351..744456 (+) 2106 WP_000855505.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  AH5611_RS03560 (AH5611_000687) nrdF 744574..745545 (+) 972 WP_000562500.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  AH5611_RS03565 (AH5611_000688) ceuB 745920..746891 (+) 972 WP_000876313.1 ABC transporter permease Machinery gene
  AH5611_RS03570 (AH5611_000689) - 746878..747834 (+) 957 WP_001245581.1 iron chelate uptake ABC transporter family permease subunit -
  AH5611_RS03575 (AH5611_000690) - 747831..748592 (+) 762 WP_000616861.1 ATP-binding cassette domain-containing protein -
  AH5611_RS03580 (AH5611_000691) - 748707..749735 (+) 1029 WP_000754454.1 siderophore ABC transporter substrate-binding protein -
  AH5611_RS03585 (AH5611_000692) - 750052..750366 (-) 315 WP_001127269.1 CHY zinc finger protein -
  AH5611_RS03590 (AH5611_000693) murB 750384..751307 (-) 924 WP_000608439.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35544.01 Da        Isoelectric Point: 10.1963

>NTDB_id=564782 AH5611_RS03565 WP_000876313.1 745920..746891(+) (ceuB) [Staphylococcus aureus strain USA600]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSISGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINVALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRVIVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=564782 AH5611_RS03565 WP_000876313.1 745920..746891(+) (ceuB) [Staphylococcus aureus strain USA600]
ATGAAGTATTTATTAAAGGGAAAAATTTTGCTTCTATTACTTATATTGCTAACAATCATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTATCAGACTCACAGCAAAATATATTGTTCTCAAGTCGAATACCAAGAACAA
TGAGTATTTTAATTGCTGGAAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGTATCTTAATTGCCTTATTATTCTTTCCAACTGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGCATCAGCGGAACATTTTTATTTGTTAAAATTATTGATTTTATCAAAGTGA
AAGATGTCATCTTTGTACCACTATTAGGGATTATGATGGGTGGCATTGTCGCTAGTTTTACAACGTTTATTTCATTACGT
ACGAACGCCGTACAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGTTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCGAATCATTTCACAATTGTAGGAATGGGTAAAGACTTTACCA
ATAATTTAGGTTTGAGTTATGAAAAATTAATAAATGTTGCTCTATTTATTACTGCCACAATTACGGCATTAGTCGTCGTG
ACAGTTGGAACTTTACCATTCTTAGGTTTAGTTATTCCAAATATTATTTCGATTTATAGAGGCGATCATTTGAAAAATGC
AATTCCTCATACAATGATGTTAGGTGCAATATTTGTACTGTTTTCAGATATTGTAGGTAGAGTCATCGTTTATCCTTATG
AAATAAACATTGGCTTAACGATTGGTGTGTTTGGAACAATCATTTTCCTTATCTTACTAATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.071

0.471