Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AH5611_RS03650 Genome accession   NZ_CP092055
Coordinates   762508..763590 (+) Length   360 a.a.
NCBI ID   WP_238762337.1    Uniprot ID   -
Organism   Staphylococcus aureus strain USA600     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 757508..768590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AH5611_RS03630 (AH5611_000701) - 757877..758947 (-) 1071 WP_000460988.1 GGDEF domain-containing protein -
  AH5611_RS03635 (AH5611_000702) - 759265..760320 (+) 1056 WP_000258151.1 MraY family glycosyltransferase -
  AH5611_RS03640 (AH5611_000703) - 760492..761133 (-) 642 WP_000192949.1 YigZ family protein -
  AH5611_RS03645 (AH5611_000704) fakB1 761277..762143 (+) 867 WP_000686346.1 fatty acid kinase binding subunit FakB1 -
  AH5611_RS03650 (AH5611_000705) comFA 762508..763590 (+) 1083 WP_238762337.1 DEAD/DEAH box helicase Machinery gene
  AH5611_RS03655 (AH5611_000706) - 763583..764257 (+) 675 WP_001057970.1 ComF family protein -
  AH5611_RS03660 (AH5611_000707) raiA 764318..764890 (+) 573 WP_000617735.1 ribosome-associated translation inhibitor RaiA -
  AH5611_RS03665 (AH5611_000708) secA 765305..767836 (+) 2532 WP_000506533.1 preprotein translocase subunit SecA -
  AH5611_RS03670 - 767878..767971 (+) 94 Protein_710 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 42090.60 Da        Isoelectric Point: 9.5935

>NTDB_id=564783 AH5611_RS03650 WP_238762337.1 762508..763590(+) (comFA) [Staphylococcus aureus strain USA600]
MDNVTRYKITESSQSSSQAYYHLSFELWEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSTK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPIPKYRYFKLNNNKIQKMLYRILQDQISNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMILAKKEIQNMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=564783 AH5611_RS03650 WP_238762337.1 762508..763590(+) (comFA) [Staphylococcus aureus strain USA600]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTGGGAACAACAGTCTTATGCCTCAGAACACATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTAAAGTCATCTACTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAATTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAGTAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACGTTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCCACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCTAGCTAAAAAAGAGATTCAAAA
TATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-318)

Type III restriction enzyme, res subunit (ResIII)

(25-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.922

92.778

0.361