Detailed information NTG0564783

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J5O00_RS13940
• Genome accession: NZ_CP074415
• Coordinates: 2938375..2939244 (+)
• Length: 289 a.a.
• NCBI ID: WP_025501249.1
• Uniprot ID: A0AA46L6W6
• Organism: Vibrio parahaemolyticus strain 64
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2933375..2944244

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5O00_RS13920	nadC	2933798..2934685 (+)	888	WP_025523107.1	carboxylating nicotinate-nucleotide diphosphorylase	-
J5O00_RS13925	pilA	2934949..2935368 (+)	420	WP_069514826.1	pilin	Machinery gene
J5O00_RS13930	pilB	2935378..2937063 (+)	1686	WP_219079189.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J5O00_RS13935	pilC	2937087..2938310 (+)	1224	WP_029804706.1	type II secretion system F family protein	Machinery gene
J5O00_RS13940	pilD	2938375..2939244 (+)	870	WP_025501249.1	A24 family peptidase	Machinery gene
J5O00_RS13945	coaE	2939245..2939859 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
J5O00_RS13950	zapD	2939887..2940627 (+)	741	WP_023624252.1	cell division protein ZapD	-
J5O00_RS13955	yacG	2940696..2940890 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
J5O00_RS13960	rplS	2941284..2941637 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
J5O00_RS13965	trmD	2941679..2942422 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
J5O00_RS13970	rimM	2942450..2942998 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
J5O00_RS13975	rpsP	2943027..2943275 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32377.47 Da
• Isoelectric Point: 7.1970

>NTDB_id=564783 J5O00_RS13940 WP_025501249.1 2938375..2939244(+) (pilD) [Vibrio parahaemolyticus strain 64]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=564783 J5O00_RS13940 WP_025501249.1 2938375..2939244(+) (pilD) [Vibrio parahaemolyticus strain 64]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATTATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTACTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGATATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.619	100	0.896
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446