Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KAF26_RS05230 Genome accession   NZ_CP074363
Coordinates   1206563..1207822 (-) Length   419 a.a.
NCBI ID   WP_003466392.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. secalis strain CFBP 2539     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1201563..1212822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAF26_RS05205 (KAF26_05130) - 1202614..1202829 (+) 216 WP_003466408.1 hypothetical protein -
  KAF26_RS05210 (KAF26_05135) - 1202928..1203605 (+) 678 WP_003466405.1 response regulator transcription factor -
  KAF26_RS05215 (KAF26_05140) - 1203598..1204932 (+) 1335 WP_003477107.1 HAMP domain-containing sensor histidine kinase -
  KAF26_RS05220 (KAF26_05145) coaE 1205059..1205679 (-) 621 WP_003466399.1 dephospho-CoA kinase -
  KAF26_RS05225 (KAF26_05150) - 1205693..1206556 (-) 864 WP_003466396.1 prepilin peptidase -
  KAF26_RS05230 (KAF26_05155) pilC 1206563..1207822 (-) 1260 WP_003466392.1 type II secretion system F family protein Machinery gene
  KAF26_RS05235 (KAF26_05160) pilE 1208208..1208666 (+) 459 WP_003466389.1 pilin Machinery gene
  KAF26_RS05240 (KAF26_05165) pilB 1209398..1211134 (+) 1737 WP_003466384.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KAF26_RS05245 (KAF26_05170) - 1211309..1211761 (-) 453 WP_230811680.1 Fic family protein -
  KAF26_RS05250 (KAF26_05175) - 1211758..1211940 (-) 183 WP_003466380.1 YhfG family protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45520.67 Da        Isoelectric Point: 10.1825

>NTDB_id=564263 KAF26_RS05230 WP_003466392.1 1206563..1207822(-) (pilC) [Xanthomonas translucens pv. secalis strain CFBP 2539]
MSATRSAVSKEPVARNISQQVPFVWEGTDKRGIKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGSAGSKISAKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVGQVRTDIEGGSSLYEAISKHPVQFDELYRNLVKAGEGAGVLE
TVLETVATYKENTEALKGKIKKALFYPAAVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWL
LLIVLVGSIVGFVFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQANLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIV
GGMVVGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=564263 KAF26_RS05230 WP_003466392.1 1206563..1207822(-) (pilC) [Xanthomonas translucens pv. secalis strain CFBP 2539]
ATGTCCGCAACTCGTAGCGCAGTATCCAAAGAACCCGTCGCACGCAATATCAGCCAGCAGGTCCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCATCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGTGCGGAATTGCGCCGCC
AGGGCATCACCCCGTCGGTGGTCAAGCCGAAACCCAAACCCCTGTTCGGCTCCGCCGGCAGCAAGATCAGCGCGAAGGAC
ATTGCCTTCTTCAGCCGCCAGATGGCGACCATGATGAAGTCGGGCGTCCCCATCGTGGGATCGCTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGGCCAGGTCCGCACCGACATCGAAGGAGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCATCCGGTCCAGTTCGACGAACTCTACCGCAACCTGGTCAAGGCCGGCGAAGGCGCCGGCGTCCTCGAA
ACCGTGCTGGAGACGGTAGCCACCTACAAGGAAAACACCGAGGCGCTGAAGGGCAAGATCAAGAAAGCCTTGTTCTATCC
GGCCGCTGTCATGGCGGTGGCGCTGCTGGTCAGCTCGATCCTGCTGGTGTGGGTGGTCCCGCAATTCGAGGATGTCTTCA
AAGGGTTTGGCGCGGAGTTACCCGCATTCACTCAGATGATCGTCGCCGCTTCACGCTTTATGGTGGCTTATTGGTGGCTC
CTGCTGATCGTGCTGGTTGGCAGCATCGTCGGCTTCGTCTTCGCCTACAAGCGCTCGCCGTCGATGCAGCACGGCATGGA
CCGACTGATCCTGAAGGTGCCGATCATCGGCCAGATCATGCACAACAGTTCCGTGGCCCGCTTCTCGCGGACACTGGGCG
TCACCTTCCGCGCCGGCGTCCCGTTGGTGGAAGCGCTGGACATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAGAAA
GCCGTGCTGCGCATGCGTGACGACGTGTCGGTGGGCTACCCCGTCAACGTGGCGATGAAGCAGGCCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCCATCGGCGAAGAAGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTCGATGCGTTGAGCAGCCTGCTGGAACCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCGTCGGCATGTATCTGCCCATCTTCAAGCTGGCTTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.511

0.508
  pilC Legionella pneumophila strain ERS1305867

51.733

96.42

0.499
  pilC Acinetobacter baylyi ADP1

51.117

96.181

0.492
  pilC Acinetobacter baumannii D1279779

50.62

96.181

0.487
  pilG Neisseria gonorrhoeae MS11

43.216

94.988

0.411
  pilC Vibrio cholerae strain A1552

42.222

96.659

0.408
  pilG Neisseria meningitidis 44/76-A

42.714

94.988

0.406
  pilC Vibrio campbellii strain DS40M4

40.05

94.749

0.379
  pilC Thermus thermophilus HB27

38.75

95.465

0.37