Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | KFZ67_RS01965 | Genome accession | NZ_CP074080 |
| Coordinates | 397978..398370 (-) | Length | 130 a.a. |
| NCBI ID | WP_284660378.1 | Uniprot ID | - |
| Organism | Photobacterium damselae strain Pdd0210 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 392978..403370
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFZ67_RS01945 (KFZ67_01940) | coaE | 393323..393925 (-) | 603 | WP_284660376.1 | dephospho-CoA kinase | - |
| KFZ67_RS01950 (KFZ67_01945) | pilD | 393927..394805 (-) | 879 | WP_151171377.1 | A24 family peptidase | Machinery gene |
| KFZ67_RS01955 (KFZ67_01950) | pilC | 394988..396214 (-) | 1227 | WP_106338472.1 | type II secretion system F family protein | Machinery gene |
| KFZ67_RS01960 (KFZ67_01955) | pilB | 396280..397971 (-) | 1692 | WP_284660377.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| KFZ67_RS01965 (KFZ67_01960) | pilA | 397978..398370 (-) | 393 | WP_284660378.1 | pilin | Machinery gene |
| KFZ67_RS01970 (KFZ67_01965) | ampD | 398756..399334 (+) | 579 | WP_106261933.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| KFZ67_RS01975 (KFZ67_01970) | pdhR | 399694..400467 (+) | 774 | WP_005297609.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| KFZ67_RS01980 (KFZ67_01975) | aceE | 400548..403208 (+) | 2661 | WP_068945542.1 | pyruvate dehydrogenase (acetyl-transferring), homodimeric type | - |
Sequence
Protein
Download Length: 130 a.a. Molecular weight: 13630.78 Da Isoelectric Point: 5.0486
>NTDB_id=563055 KFZ67_RS01965 WP_284660378.1 397978..398370(-) (pilA) [Photobacterium damselae strain Pdd0210]
MKGQKGFTLIELMIVVAIIGVLSAIAIPAYKDYVKKSQMASAMATMKSLITPAELEIQENGSISGGISTLGMSAGANTLG
IITANSDNLVFKFVGGAMNNDTLTFKRTDADGWSCTRSDTTGMPDIEGCK
MKGQKGFTLIELMIVVAIIGVLSAIAIPAYKDYVKKSQMASAMATMKSLITPAELEIQENGSISGGISTLGMSAGANTLG
IITANSDNLVFKFVGGAMNNDTLTFKRTDADGWSCTRSDTTGMPDIEGCK
Nucleotide
Download Length: 393 bp
>NTDB_id=563055 KFZ67_RS01965 WP_284660378.1 397978..398370(-) (pilA) [Photobacterium damselae strain Pdd0210]
ATGAAAGGACAAAAGGGTTTTACCTTAATTGAATTGATGATCGTAGTGGCGATCATTGGTGTGTTATCAGCAATCGCGAT
TCCAGCTTACAAAGACTATGTTAAAAAAAGTCAAATGGCATCAGCAATGGCGACTATGAAATCATTAATTACTCCTGCAG
AACTCGAAATACAGGAAAATGGCTCAATAAGTGGTGGAATTTCAACACTAGGAATGTCAGCAGGGGCAAATACACTGGGA
ATCATTACAGCTAATAGTGACAACCTAGTATTTAAATTCGTTGGGGGAGCTATGAATAATGACACTCTAACATTTAAAAG
GACAGATGCCGATGGTTGGTCATGTACACGAAGTGATACAACAGGAATGCCAGATATTGAAGGTTGTAAGTAA
ATGAAAGGACAAAAGGGTTTTACCTTAATTGAATTGATGATCGTAGTGGCGATCATTGGTGTGTTATCAGCAATCGCGAT
TCCAGCTTACAAAGACTATGTTAAAAAAAGTCAAATGGCATCAGCAATGGCGACTATGAAATCATTAATTACTCCTGCAG
AACTCGAAATACAGGAAAATGGCTCAATAAGTGGTGGAATTTCAACACTAGGAATGTCAGCAGGGGCAAATACACTGGGA
ATCATTACAGCTAATAGTGACAACCTAGTATTTAAATTCGTTGGGGGAGCTATGAATAATGACACTCTAACATTTAAAAG
GACAGATGCCGATGGTTGGTCATGTACACGAAGTGATACAACAGGAATGCCAGATATTGAAGGTTGTAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Pseudomonas aeruginosa PAK |
43.333 |
100 |
0.5 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
52.5 |
92.308 |
0.485 |
| pilA | Vibrio cholerae strain A1552 |
38.194 |
100 |
0.423 |
| pilA | Vibrio cholerae C6706 |
38.194 |
100 |
0.423 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.194 |
100 |
0.423 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.157 |
97.692 |
0.392 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
37.903 |
95.385 |
0.362 |