Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   L6L55_RS18525 Genome accession   NZ_CP091700
Coordinates   3585859..3586596 (+) Length   245 a.a.
NCBI ID   WP_000197673.1    Uniprot ID   -
Organism   Escherichia coli strain KFu019     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3580859..3591596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L55_RS18510 (L6L55_18510) clpC 3581313..3583886 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  L6L55_RS18515 (L6L55_18515) yfiH 3584016..3584747 (-) 732 WP_214142525.1 purine nucleoside phosphorylase YfiH -
  L6L55_RS18520 (L6L55_18520) rluD 3584744..3585724 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L6L55_RS18525 (L6L55_18525) comL 3585859..3586596 (+) 738 WP_000197673.1 outer membrane protein assembly factor BamD Machinery gene
  L6L55_RS18530 (L6L55_18530) raiA 3586867..3587208 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  L6L55_RS18535 (L6L55_18535) pheL 3587312..3587359 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  L6L55_RS18540 (L6L55_18540) pheA 3587458..3588618 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  L6L55_RS18545 (L6L55_18545) tyrA 3588661..3589782 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  L6L55_RS18550 (L6L55_18550) aroF 3589793..3590863 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  L6L55_RS18555 (L6L55_18555) yfiL 3591073..3591438 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.47 Da        Isoelectric Point: 7.1587

>NTDB_id=563053 L6L55_RS18525 WP_000197673.1 3585859..3586596(+) (comL) [Escherichia coli strain KFu019]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPKSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=563053 L6L55_RS18525 WP_000197673.1 3585859..3586596(+) (comL) [Escherichia coli strain KFu019]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAAAAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371