Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KFZ67_RS01955 Genome accession   NZ_CP074080
Coordinates   394988..396214 (-) Length   408 a.a.
NCBI ID   WP_106338472.1    Uniprot ID   A0AAD3ZVT0
Organism   Photobacterium damselae strain Pdd0210     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 389988..401214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ67_RS01930 (KFZ67_01925) mutT 391791..392198 (-) 408 WP_069530749.1 8-oxo-dGTP diphosphatase MutT -
  KFZ67_RS01935 (KFZ67_01930) yacG 392300..392509 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  KFZ67_RS01940 (KFZ67_01935) zapD 392518..393255 (-) 738 WP_005297594.1 cell division protein ZapD -
  KFZ67_RS01945 (KFZ67_01940) coaE 393323..393925 (-) 603 WP_284660376.1 dephospho-CoA kinase -
  KFZ67_RS01950 (KFZ67_01945) pilD 393927..394805 (-) 879 WP_151171377.1 A24 family peptidase Machinery gene
  KFZ67_RS01955 (KFZ67_01950) pilC 394988..396214 (-) 1227 WP_106338472.1 type II secretion system F family protein Machinery gene
  KFZ67_RS01960 (KFZ67_01955) pilB 396280..397971 (-) 1692 WP_284660377.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KFZ67_RS01965 (KFZ67_01960) pilA 397978..398370 (-) 393 WP_284660378.1 pilin Machinery gene
  KFZ67_RS01970 (KFZ67_01965) ampD 398756..399334 (+) 579 WP_106261933.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KFZ67_RS01975 (KFZ67_01970) pdhR 399694..400467 (+) 774 WP_005297609.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45016.15 Da        Isoelectric Point: 10.0330

>NTDB_id=563053 KFZ67_RS01955 WP_106338472.1 394988..396214(-) (pilC) [Photobacterium damselae strain Pdd0210]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRAQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMASSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=563053 KFZ67_RS01955 WP_106338472.1 394988..396214(-) (pilC) [Photobacterium damselae strain Pdd0210]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGGGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTGCGAGCGCAACTGACTGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ACCCTTCTACGCTCGATAAAATCCGCAATCAGATGAAAAGTAGCGATGTAACGGCTATTACTCGCCAACTTGCGACCATG
ATCGAATCTGGAGTTCCGATTGTGCAAGCTCTGAAGCTAATGGCCAGTAGCCACCATAAAGCAGAAGTGCGCGCGGTATT
AACTCAGGTTAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCGCTAAAATCAAGTTCGCCGCTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTCGGTCAGGTATTTGTTCGCTTAGCCACGTATCGAGAA
AAAAGCGAGGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACAGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTTGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCTGAACTTCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTACGGGGGATACTTAGCTGTAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGTATGGCTCGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTTGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACTTTTAGTGCCGGTATTCCCCTACTAACAG
GTCTACAGTCGGCAGGTAAAACCGCAGGCAACTTACATATAGAAGAGGCCATTATGGAAGCACATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTGCAGATGACCATGATCGGGGAAGA
GTCCGGCTCTCTTGACGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTAATCATCATTGTGCTTGGCGTTCTAATTGGCGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.5

98.039

0.544
  pilG Neisseria meningitidis 44/76-A

42.222

99.265

0.419
  pilG Neisseria gonorrhoeae MS11

42.222

99.265

0.419
  pilC Pseudomonas stutzeri DSM 10701

40.295

99.755

0.402
  pilC Acinetobacter baumannii D1279779

40.196

100

0.402
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387
  pilC Legionella pneumophila strain ERS1305867

38.191

97.549

0.373