Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KFZ67_RS01950 Genome accession   NZ_CP074080
Coordinates   393927..394805 (-) Length   292 a.a.
NCBI ID   WP_151171377.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd0210     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 388927..399805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ67_RS01930 (KFZ67_01925) mutT 391791..392198 (-) 408 WP_069530749.1 8-oxo-dGTP diphosphatase MutT -
  KFZ67_RS01935 (KFZ67_01930) yacG 392300..392509 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  KFZ67_RS01940 (KFZ67_01935) zapD 392518..393255 (-) 738 WP_005297594.1 cell division protein ZapD -
  KFZ67_RS01945 (KFZ67_01940) coaE 393323..393925 (-) 603 WP_284660376.1 dephospho-CoA kinase -
  KFZ67_RS01950 (KFZ67_01945) pilD 393927..394805 (-) 879 WP_151171377.1 A24 family peptidase Machinery gene
  KFZ67_RS01955 (KFZ67_01950) pilC 394988..396214 (-) 1227 WP_106338472.1 type II secretion system F family protein Machinery gene
  KFZ67_RS01960 (KFZ67_01955) pilB 396280..397971 (-) 1692 WP_284660377.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KFZ67_RS01965 (KFZ67_01960) pilA 397978..398370 (-) 393 WP_284660378.1 pilin Machinery gene
  KFZ67_RS01970 (KFZ67_01965) ampD 398756..399334 (+) 579 WP_106261933.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32559.08 Da        Isoelectric Point: 8.2918

>NTDB_id=563052 KFZ67_RS01950 WP_151171377.1 393927..394805(-) (pilD) [Photobacterium damselae strain Pdd0210]
MAIFSYYPWLFPVFATIFGLLVGSFLNVVIYRLPIMMERQWRNECIEAFPDLIKADAKLNTDTFNLSVPRSRCPHCGHLI
SAVENIPVISWLVLKGKCKSCHTPISRRYPMIELLTAALCGTVAILFPPTWWAVAVIFFTFALIALTFIDIDKMLLPDQI
TLPLLWAGIFLALLGISPVSLQDSVIGAIAGYLCLWSVFWIFKLLTKKDGMGYGDFKLLAALGAWLGWQMLPVVVLLSSL
AGAICGIILLKVQKSDHQTPFSFGPYLAIAGWISLLWGHSIITWYVSNILGM

Nucleotide


Download         Length: 879 bp        

>NTDB_id=563052 KFZ67_RS01950 WP_151171377.1 393927..394805(-) (pilD) [Photobacterium damselae strain Pdd0210]
ATGGCTATTTTCAGTTACTACCCTTGGCTATTTCCTGTTTTTGCTACCATTTTTGGCTTATTGGTAGGCAGCTTTCTCAA
TGTGGTGATCTACCGCTTACCCATTATGATGGAGCGTCAATGGCGTAACGAATGTATCGAAGCGTTTCCAGATTTAATCA
AAGCCGATGCGAAGCTAAATACCGACACATTTAATTTAAGCGTGCCGCGTTCTCGTTGTCCTCATTGTGGTCATCTCATT
AGTGCTGTAGAAAATATTCCTGTTATTAGTTGGCTAGTATTAAAGGGGAAATGCAAATCCTGTCACACGCCGATTAGCCG
ACGTTACCCTATGATTGAACTGTTAACTGCAGCATTGTGTGGTACGGTTGCGATCCTATTTCCGCCAACTTGGTGGGCGG
TTGCAGTAATCTTTTTCACTTTCGCCTTAATTGCTCTGACTTTTATCGATATTGATAAGATGCTACTGCCTGATCAAATC
ACCCTACCACTACTTTGGGCTGGTATTTTTCTCGCTCTATTAGGCATTAGTCCTGTGTCACTACAAGATTCTGTGATTGG
TGCAATTGCTGGTTACCTCTGTTTGTGGAGCGTCTTTTGGATCTTTAAATTATTAACCAAAAAAGACGGTATGGGTTATG
GCGACTTTAAGCTGTTAGCCGCTTTAGGAGCATGGCTTGGCTGGCAAATGCTGCCTGTTGTGGTTCTGCTATCCTCTCTT
GCCGGGGCAATTTGTGGCATTATCTTATTGAAAGTACAAAAAAGTGATCACCAAACCCCATTTTCCTTTGGTCCTTATCT
TGCGATTGCAGGCTGGATCAGTCTATTGTGGGGACACTCGATCATCACTTGGTATGTCAGTAATATTTTAGGAATGTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

65.411

100

0.654
  pilD Vibrio cholerae strain A1552

62.116

100

0.623
  pilD Acinetobacter nosocomialis M2

52.045

92.123

0.479
  pilD Acinetobacter baumannii D1279779

52.045

92.123

0.479
  pilD Neisseria gonorrhoeae MS11

48.201

95.205

0.459