Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KFF03_RS14490 Genome accession   NZ_CP073745
Coordinates   3190595..3191821 (+) Length   408 a.a.
NCBI ID   WP_255857629.1    Uniprot ID   A0A9J7AGW7
Organism   Bacterioplanoides sp. SCSIO 12839     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3185595..3196821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFF03_RS14465 (KFF03_14410) nadC 3186531..3187379 (+) 849 WP_255857626.1 carboxylating nicotinate-nucleotide diphosphorylase -
  KFF03_RS14470 (KFF03_14415) - 3187397..3188062 (+) 666 WP_255857627.1 hypothetical protein -
  KFF03_RS14480 - 3188289..3188747 (+) 459 WP_304941505.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  KFF03_RS14485 (KFF03_14425) pilB 3188857..3190554 (+) 1698 WP_255857628.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KFF03_RS14490 (KFF03_14430) pilC 3190595..3191821 (+) 1227 WP_255857629.1 type II secretion system F family protein Machinery gene
  KFF03_RS14495 (KFF03_14435) pilD 3191822..3192718 (+) 897 WP_255857630.1 A24 family peptidase Machinery gene
  KFF03_RS14500 (KFF03_14440) coaE 3192734..3193339 (+) 606 WP_255857631.1 dephospho-CoA kinase -
  KFF03_RS14505 (KFF03_14445) yacG 3193365..3193553 (+) 189 WP_255857632.1 DNA gyrase inhibitor YacG -
  KFF03_RS14510 (KFF03_14450) - 3193646..3195292 (+) 1647 WP_255857633.1 NAD(P)/FAD-dependent oxidoreductase -
  KFF03_RS14515 (KFF03_14455) - 3195369..3195791 (-) 423 WP_255857634.1 copper chaperone PCu(A)C -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44494.30 Da        Isoelectric Point: 7.1716

>NTDB_id=560385 KFF03_RS14490 WP_255857629.1 3190595..3191821(+) (pilC) [Bacterioplanoides sp. SCSIO 12839]
MAKPAKNSSFVWEGTNKRGQTVKGEISSQNAAMVKVQLRKQGVTPLKVKKKAEPLFGIGGERKKPIKSADVTFFVRQMAT
MIKAGVPLVQSFEIVADGVDNSSMKTLILELRDAVAAGNDFASALKQHPMYFDDLTCNLVEAGEQAGALETMLDKVAIYK
EKTEALKSKIKKATMYPAITLAIAAVVTVILLVKVVPTFDAMFQNFGSELPAPTQFVVMLSEIAQAYYLEFLAVVIISII
AFTQAMKRSQIFRENFERFILKLPLFGDLIRKSAVARYARVLSTTFAAGVPLVEALDSVAGAVGNIVYKDAVLKIRDEVA
TGQQMHFAMKTTEVFPNMVIQMTSIGEESGALDAMLDKAASYFEQEVDDTVEGLTSLMEPMIMAFLGVVIGGLIVAMYLP
IFQIGDVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=560385 KFF03_RS14490 WP_255857629.1 3190595..3191821(+) (pilC) [Bacterioplanoides sp. SCSIO 12839]
ATGGCAAAACCCGCAAAAAACAGCAGCTTTGTCTGGGAAGGAACCAACAAACGCGGCCAGACAGTCAAAGGCGAAATATC
CAGCCAAAATGCTGCAATGGTTAAAGTTCAATTACGAAAACAAGGTGTGACTCCACTAAAGGTTAAGAAAAAAGCAGAGC
CTTTATTCGGTATAGGTGGAGAACGTAAGAAGCCGATTAAATCAGCAGATGTAACATTTTTTGTTCGCCAAATGGCAACC
ATGATTAAAGCTGGCGTTCCGTTGGTACAGTCATTTGAAATTGTAGCCGACGGTGTCGATAACAGTTCAATGAAAACACT
GATTCTTGAATTACGTGATGCCGTTGCAGCTGGTAATGATTTCGCTTCAGCGCTCAAGCAACACCCTATGTACTTCGATG
ACCTAACCTGTAACCTAGTGGAAGCTGGTGAACAAGCCGGTGCATTAGAGACAATGTTGGATAAAGTAGCTATATATAAA
GAAAAAACCGAAGCATTGAAAAGTAAAATTAAAAAAGCAACGATGTACCCTGCAATAACCTTAGCAATAGCAGCAGTGGT
AACTGTAATTTTATTGGTTAAGGTTGTTCCAACTTTTGATGCAATGTTTCAAAACTTTGGTTCAGAACTTCCGGCTCCAA
CACAGTTCGTCGTAATGCTATCTGAAATAGCTCAAGCTTATTATTTAGAATTTCTTGCAGTAGTAATTATTAGTATCATT
GCTTTTACTCAAGCCATGAAACGGTCACAAATTTTTCGTGAGAATTTTGAACGATTTATACTTAAGCTTCCTCTTTTTGG
AGACTTGATACGTAAAAGTGCAGTAGCAAGGTATGCGCGAGTTTTATCTACCACTTTTGCAGCAGGTGTTCCTTTAGTTG
AAGCGCTTGATTCTGTAGCTGGGGCTGTTGGAAATATTGTCTATAAAGATGCTGTTCTAAAAATACGTGATGAAGTCGCA
ACAGGCCAACAAATGCATTTTGCAATGAAAACAACTGAAGTTTTTCCTAATATGGTCATTCAAATGACCAGTATTGGTGA
AGAATCAGGTGCACTCGATGCGATGCTCGATAAAGCTGCTTCGTATTTTGAGCAGGAAGTAGACGATACGGTTGAAGGGC
TTACCTCATTAATGGAACCAATGATTATGGCTTTTTTGGGAGTAGTTATTGGTGGATTAATTGTTGCTATGTATTTGCCA
ATTTTCCAAATAGGCGATGTCGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.867

99.51

0.586
  pilC Acinetobacter baumannii D1279779

55.75

98.039

0.547
  pilC Acinetobacter baylyi ADP1

55.138

97.794

0.539
  pilC Legionella pneumophila strain ERS1305867

51.106

99.755

0.51
  pilG Neisseria meningitidis 44/76-A

43.812

99.02

0.434
  pilG Neisseria gonorrhoeae MS11

43.812

99.02

0.434
  pilC Vibrio cholerae strain A1552

38.765

99.265

0.385
  pilC Vibrio campbellii strain DS40M4

37.406

98.284

0.368