Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   KCG51_RS02650 Genome accession   NZ_CP073119
Coordinates   531690..532931 (-) Length   413 a.a.
NCBI ID   WP_254342735.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 526690..537931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS02620 (KCG51_02585) ispH 527384..528352 (-) 969 WP_250579031.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KCG51_RS02625 (KCG51_02590) lspA 528366..528872 (-) 507 WP_049331903.1 signal peptidase II -
  KCG51_RS02630 (KCG51_02595) glyQ 529021..529920 (-) 900 WP_003685919.1 glycine--tRNA ligase subunit alpha -
  KCG51_RS02635 (KCG51_02600) yacG 530002..530184 (-) 183 WP_250579032.1 DNA gyrase inhibitor YacG -
  KCG51_RS02640 (KCG51_02605) coaE 530166..530801 (-) 636 WP_250579033.1 dephospho-CoA kinase -
  KCG51_RS02645 (KCG51_02610) pilD 530801..531688 (-) 888 WP_250579034.1 A24 family peptidase Machinery gene
  KCG51_RS02650 (KCG51_02615) pilG 531690..532931 (-) 1242 WP_254342735.1 type II secretion system F family protein Machinery gene
  KCG51_RS02655 (KCG51_02620) pilF 533011..534690 (-) 1680 WP_107810558.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KCG51_RS02660 (KCG51_02625) - 535083..536144 (-) 1062 WP_254342737.1 nucleotidyltransferase domain-containing protein -
  KCG51_RS02665 (KCG51_02630) - 536159..536917 (-) 759 WP_254342739.1 nucleotidyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 46032.26 Da        Isoelectric Point: 10.1374

>NTDB_id=558150 KCG51_RS02650 WP_254342735.1 531690..532931(-) (pilG) [Neisseria subflava strain HP0069]
MAQAEQKRSLFGSRSKGKRFTFEGKNIETERLVRGEVVAKDEEEARKKLQRRGIRPLRISKVKTARKRRITQEDITVFTR
QLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRSDVEQGSALGKSFSKYPKYFDRFYCNLVSAGESGGVLESLLDKL
AVYKEKTQAIKKKVKTALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMGAELPRLTQLVMSLSDLFVDYGWIMIILLI
VSAFGLYKLHEKSPTFQKRIDALILRLPVFGTIVRKATIARWARTTSTLFAAGVPLVEVLDSVAGASGNILYEEATQDIR
AKVTQGLSLTSSMQSTDMFPNMVIQMAAIGEESGSLDDMLNKAAEFYEDEVDNSVSRLSHLMKPIIMVVLGSLIGILLIA
MYLPLFNLGNVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=558150 KCG51_RS02650 WP_254342735.1 531690..532931(-) (pilG) [Neisseria subflava strain HP0069]
ATGGCTCAAGCAGAGCAAAAAAGAAGTCTGTTCGGCTCAAGAAGCAAAGGCAAGCGTTTTACATTTGAAGGAAAAAATAT
CGAGACCGAACGTCTTGTCCGCGGCGAAGTAGTTGCCAAAGATGAAGAAGAGGCGCGCAAAAAACTCCAACGCAGAGGCA
TTCGCCCTTTGCGTATCAGCAAAGTCAAAACCGCACGCAAACGCCGCATTACCCAAGAAGACATTACAGTGTTCACCCGC
CAACTGGCAACAATGATGAAGGCAGGCTTACCGCTGATGCAGGCTTTTGAAATCGTTGCGCGCGGCCACTCCAATCCGAG
TATGACTGAAATGCTGATGCAGGTTCGCTCCGATGTCGAACAAGGTAGCGCATTGGGTAAATCGTTCTCCAAATATCCAA
AATATTTCGACCGTTTCTATTGCAATCTGGTCAGCGCAGGCGAGTCCGGCGGCGTACTGGAAAGCTTATTGGACAAACTG
GCTGTCTATAAAGAAAAAACCCAAGCCATTAAGAAAAAAGTTAAAACCGCACTGACCTACCCGATTGCTATTATCGTGGT
GGCGATTGCGCTTATCTTCATCATGATGATGTTTGTACTGCCTGCCTTTAAAGAAGTTTATGCCAATATGGGTGCAGAGC
TGCCAAGGCTTACCCAACTTGTCATGAGCTTGTCCGATTTATTCGTCGACTATGGCTGGATTATGATTATCCTTTTGATT
GTTTCCGCCTTCGGCCTGTACAAACTCCATGAAAAATCGCCTACCTTCCAAAAACGAATTGATGCTTTGATTTTAAGACT
GCCTGTTTTTGGCACCATTGTCCGTAAAGCAACCATTGCCCGTTGGGCGCGTACGACTTCTACCCTCTTCGCAGCCGGTG
TTCCTTTGGTGGAAGTATTAGATTCAGTTGCAGGCGCATCCGGTAATATTCTCTATGAAGAAGCCACTCAAGACATCCGC
GCCAAGGTAACCCAAGGTCTGTCGCTGACATCCAGTATGCAAAGTACTGATATGTTCCCCAATATGGTGATCCAAATGGC
GGCCATCGGCGAAGAGTCAGGCTCTTTGGACGATATGCTGAACAAAGCAGCCGAATTCTACGAAGATGAAGTAGACAACT
CCGTCTCCAGATTGTCTCACTTGATGAAGCCTATCATCATGGTGGTATTGGGTTCGCTCATCGGTATCTTGCTGATTGCC
ATGTATCTGCCGTTGTTTAACTTGGGTAATGTCGTAGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

71.782

97.821

0.702
  pilG Neisseria meningitidis 44/76-A

70.792

97.821

0.692
  pilC Acinetobacter baylyi ADP1

46.115

96.61

0.446
  pilC Legionella pneumophila strain ERS1305867

46.096

96.126

0.443
  pilC Acinetobacter baumannii D1279779

45.98

96.368

0.443
  pilC Pseudomonas stutzeri DSM 10701

45.75

96.852

0.443
  pilC Vibrio cholerae strain A1552

38.25

96.852

0.37
  pilC Thermus thermophilus HB27

38.107

94.673

0.361