Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   L1704_RS10175 Genome accession   NZ_CP091107
Coordinates   1989816..1990892 (+) Length   358 a.a.
NCBI ID   WP_010906242.1    Uniprot ID   Q9CE70
Organism   Lactococcus lactis subsp. lactis strain UC109     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1984816..1995892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1704_RS10150 (L1704_10150) pgsA 1984976..1985548 (-) 573 WP_004254763.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L1704_RS10155 (L1704_10155) - 1985589..1986485 (-) 897 WP_058225966.1 RodZ family helix-turn-helix domain-containing protein -
  L1704_RS10160 (L1704_10160) - 1986697..1987980 (-) 1284 WP_004254752.1 pitrilysin family protein -
  L1704_RS10165 (L1704_10165) - 1987970..1989256 (-) 1287 WP_021214872.1 pitrilysin family protein -
  L1704_RS10170 (L1704_10170) yaaA 1989454..1989816 (+) 363 WP_004254746.1 S4 domain-containing protein YaaA -
  L1704_RS10175 (L1704_10175) recF 1989816..1990892 (+) 1077 WP_010906242.1 DNA replication/repair protein RecF Machinery gene
  L1704_RS10180 (L1704_10180) - 1990979..1991347 (-) 369 WP_004254740.1 carboxymuconolactone decarboxylase family protein -
  L1704_RS10185 (L1704_10185) - 1991425..1991802 (+) 378 WP_010906243.1 MerR family transcriptional regulator -
  L1704_RS10190 (L1704_10190) - 1991815..1992759 (-) 945 WP_010906244.1 alpha/beta hydrolase -
  L1704_RS10195 (L1704_10195) - 1993170..1993667 (+) 498 WP_152023952.1 hypothetical protein -
  L1704_RS10200 (L1704_10200) - 1993818..1994105 (+) 288 WP_058225968.1 hypothetical protein -
  L1704_RS10205 (L1704_10205) - 1994206..1995033 (+) 828 WP_058225969.1 endonuclease/exonuclease/phosphatase family protein -
  L1704_RS10210 (L1704_10210) - 1995036..1995263 (+) 228 WP_058225970.1 hypothetical protein -
  L1704_RS10215 (L1704_10215) - 1995244..1995462 (+) 219 WP_058225971.1 hypothetical protein -
  L1704_RS10220 (L1704_10220) - 1995455..1995649 (+) 195 WP_058225972.1 hypothetical protein -

Sequence

Protein


Download         Length: 358 a.a.        Molecular weight: 41356.23 Da        Isoelectric Point: 6.8652

>NTDB_id=558149 L1704_RS10175 WP_010906242.1 1989816..1990892(+) (recF) [Lactococcus lactis subsp. lactis strain UC109]
MKLKAIELKNFRNYEELKLDFHPNLNIFLGQNAQGKTNILEAIHFLALTRSHRTSHDKELISWSQQEMKVSGVVEKAHAT
VPLEVQLSPKGRIAKANHLKENRLADYIGQLKILMFAPENLELVKGSPATRRKFMDIELGQIHAVYLYDSMRYNRALKER
NAYLKFDKDKIDKNFLSVLDGQLAEHGNKIMLERQNFIDKLEVHAKKIHEQLTHGKENLKIIYNQNVKTDFSKELLSRQD
HDIFRHQTSVGPHRDDLQFFINEINVADFGSQGQQRTVALSIKLAEIDLIFEETGEYPILLLDDVMSELDNHRQLDLIET
SLGKTQTFITTTTLDHLKNLPENLSIFHVNAGTIEQEQ

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=558149 L1704_RS10175 WP_010906242.1 1989816..1990892(+) (recF) [Lactococcus lactis subsp. lactis strain UC109]
ATGAAACTCAAAGCAATTGAACTCAAAAATTTTCGTAATTATGAGGAATTAAAACTTGATTTTCACCCTAATCTCAATAT
TTTTTTAGGACAAAATGCTCAAGGGAAAACAAATATTCTTGAGGCGATTCATTTTTTAGCACTCACTCGTAGTCACAGAA
CAAGTCACGACAAAGAGCTCATTTCTTGGTCACAACAAGAAATGAAGGTCTCAGGAGTCGTTGAAAAAGCTCATGCAACT
GTTCCACTTGAAGTTCAATTAAGTCCCAAAGGGAGAATTGCTAAAGCCAATCATCTCAAAGAAAATCGCTTAGCCGACTA
CATTGGTCAACTAAAAATCTTGATGTTTGCACCTGAAAATTTGGAATTAGTCAAAGGTTCTCCAGCTACCCGCAGAAAAT
TTATGGATATTGAACTGGGACAAATCCATGCGGTTTACCTTTATGATTCCATGCGATATAATCGTGCGTTAAAAGAACGG
AATGCTTACTTAAAATTTGATAAAGACAAAATTGATAAAAATTTTTTAAGTGTTCTTGACGGACAATTAGCTGAACATGG
TAATAAAATCATGCTTGAGCGGCAAAATTTTATTGATAAACTTGAAGTTCATGCAAAAAAAATCCATGAGCAACTTACTC
ATGGTAAAGAAAATTTAAAAATCATTTATAATCAAAATGTGAAAACTGACTTTTCAAAAGAATTATTGAGCAGACAAGAC
CATGATATTTTTAGGCATCAAACATCGGTTGGCCCTCATCGTGACGATTTACAATTTTTTATCAATGAGATTAATGTTGC
TGATTTTGGTAGTCAAGGACAACAACGAACCGTTGCTCTCTCAATTAAATTAGCAGAAATTGATTTAATTTTTGAAGAGA
CTGGTGAGTATCCGATTTTACTTTTAGATGATGTCATGAGTGAATTAGACAATCATCGTCAACTTGATTTGATTGAAACA
AGTTTGGGTAAAACACAAACTTTTATAACTACAACTACTCTTGATCATCTTAAAAATTTACCTGAAAATCTGAGTATTTT
CCATGTTAATGCTGGAACCATTGAACAAGAGCAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CE70

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

55

100

0.553
  recF Bacillus subtilis subsp. subtilis str. 168

45.977

97.207

0.447