Detailed information NTG0558149

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KCG51_RS02645
• Genome accession: NZ_CP073119
• Coordinates: 530801..531688 (-)
• Length: 295 a.a.
• NCBI ID: WP_250579034.1
• Uniprot ID: -
• Organism: Neisseria subflava strain HP0069
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 525801..536688

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KCG51_RS02615 (KCG51_02580)	ftsZ	526065..527264 (+)	1200	WP_063076120.1	cell division protein FtsZ	-
KCG51_RS02620 (KCG51_02585)	ispH	527384..528352 (-)	969	WP_250579031.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
KCG51_RS02625 (KCG51_02590)	lspA	528366..528872 (-)	507	WP_049331903.1	signal peptidase II	-
KCG51_RS02630 (KCG51_02595)	glyQ	529021..529920 (-)	900	WP_003685919.1	glycine--tRNA ligase subunit alpha	-
KCG51_RS02635 (KCG51_02600)	yacG	530002..530184 (-)	183	WP_250579032.1	DNA gyrase inhibitor YacG	-
KCG51_RS02640 (KCG51_02605)	coaE	530166..530801 (-)	636	WP_250579033.1	dephospho-CoA kinase	-
KCG51_RS02645 (KCG51_02610)	pilD	530801..531688 (-)	888	WP_250579034.1	A24 family peptidase	Machinery gene
KCG51_RS02650 (KCG51_02615)	pilG	531690..532931 (-)	1242	WP_254342735.1	type II secretion system F family protein	Machinery gene
KCG51_RS02655 (KCG51_02620)	pilF	533011..534690 (-)	1680	WP_107810558.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KCG51_RS02660 (KCG51_02625)	-	535083..536144 (-)	1062	WP_254342737.1	nucleotidyltransferase domain-containing protein	-

Sequence

Protein

• Length: 295 a.a.
• Molecular weight: 32288.49 Da
• Isoelectric Point: 8.3156

>NTDB_id=558149 KCG51_RS02645 WP_250579034.1 530801..531688(-) (pilD) [Neisseria subflava strain HP0069]
MLDSIYSAIDALSVLAPFAIPLAVIFGLLIGSFLNVVIYRTPIMMEREWTQFSKEHLGIELTDEEKQPFNLRKPDSRCPK
CKSPVKLWQNIPILSYVLLGGKCHSCKTAIGIRYPLIELLTGVLFGIVAWQYGWSWATIGGLILTAILIALTFIDADTQY
LPDSLTQPLIWIGLLFNLNDTFVPLHSAVWGAIAGYMSLYTLCAVYKLLTGKIGMGNGDFKLLAALGAWLGVGILPVLIF
MAALVGLVGALIARVGKGQYFAFGPSLAVAGWIILVANAPITQLVQWWLVQSGFR

Nucleotide

• Length: 888 bp

>NTDB_id=558149 KCG51_RS02645 WP_250579034.1 530801..531688(-) (pilD) [Neisseria subflava strain HP0069]
ATGCTTGATAGTATTTACTCTGCCATCGACGCCCTCTCTGTTCTTGCGCCATTCGCTATTCCTTTAGCCGTTATTTTTGG
GTTGCTGATTGGCAGCTTTCTAAACGTTGTCATTTATCGCACACCGATAATGATGGAACGCGAATGGACACAATTTTCCA
AAGAGCATTTGGGCATCGAGCTGACAGACGAAGAAAAACAGCCATTTAATCTGCGCAAACCGGATTCACGCTGCCCAAAA
TGCAAAAGCCCAGTCAAACTTTGGCAAAATATCCCCATCCTCAGCTATGTTTTACTGGGCGGGAAATGCCACTCCTGCAA
AACCGCGATCGGCATACGCTATCCGCTGATTGAGCTGCTGACAGGCGTCTTATTCGGTATTGTCGCGTGGCAATACGGCT
GGTCATGGGCGACTATTGGCGGATTAATTTTGACTGCCATATTGATTGCGCTGACCTTTATCGATGCCGATACACAATAT
TTGCCCGACAGCCTGACTCAGCCCCTAATTTGGATCGGCCTGCTGTTTAATCTGAATGACACATTCGTACCCCTGCATTC
AGCCGTTTGGGGCGCAATCGCAGGCTATATGAGCCTTTATACTTTATGCGCCGTCTATAAACTTCTGACCGGTAAAATCG
GCATGGGCAATGGCGACTTCAAACTTTTGGCCGCACTCGGGGCATGGCTGGGCGTAGGCATCTTGCCTGTTTTGATCTTC
ATGGCTGCCTTAGTCGGACTGGTGGGCGCACTTATCGCCCGTGTCGGTAAAGGTCAATATTTTGCTTTTGGTCCCAGCCT
TGCTGTGGCAGGATGGATTATTTTGGTTGCCAATGCACCTATTACCCAACTGGTACAATGGTGGCTCGTACAATCAGGAT
TCCGATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (142-249)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-132)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	70.671	95.932	0.678
pilD	Vibrio campbellii strain DS40M4	45.091	93.22	0.42
pilD	Vibrio cholerae strain A1552	46.923	88.136	0.414
pilD	Acinetobacter baumannii D1279779	46.586	84.407	0.393
pilD	Acinetobacter nosocomialis M2	46.586	84.407	0.393