Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   KCG55_RS05770 Genome accession   NZ_CP073117
Coordinates   1173756..1174997 (-) Length   413 a.a.
NCBI ID   WP_254322302.1    Uniprot ID   A0A9X9I0K0
Organism   Neisseria subflava strain HP0015     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1168756..1179997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS05740 (KCG55_05745) ispH 1169450..1170418 (-) 969 WP_254322296.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KCG55_RS05745 (KCG55_05750) lspA 1170432..1170938 (-) 507 WP_254322297.1 signal peptidase II -
  KCG55_RS05750 (KCG55_05755) glyQ 1171087..1171986 (-) 900 WP_070824173.1 glycine--tRNA ligase subunit alpha -
  KCG55_RS05755 (KCG55_05760) yacG 1172068..1172250 (-) 183 WP_003682475.1 DNA gyrase inhibitor YacG -
  KCG55_RS05760 (KCG55_05765) coaE 1172247..1172867 (-) 621 WP_254322299.1 dephospho-CoA kinase -
  KCG55_RS05765 (KCG55_05770) pilD 1172867..1173754 (-) 888 WP_254322300.1 A24 family peptidase Machinery gene
  KCG55_RS05770 (KCG55_05775) pilG 1173756..1174997 (-) 1242 WP_254322302.1 type II secretion system F family protein Machinery gene
  KCG55_RS05775 (KCG55_05780) pilF 1175076..1176755 (-) 1680 WP_254322304.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45963.02 Da        Isoelectric Point: 9.8675

>NTDB_id=558120 KCG55_RS05770 WP_254322302.1 1173756..1174997(-) (pilG) [Neisseria subflava strain HP0015]
MAQAEQKRSLFGSRSKGKRFTFEGKNTETERLVRGEVVAKDEEEARKKLQRRGIRPLRISKVKTARKRRITQEDITVFTR
QLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRSDVEQGSALGKSFSKYPKYFDRFYCNLVSAGESGGVLESLLDKL
AVYKEKTQAIKKKVKTALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMGAELPDLTQLVMNLSDLFVDYGWIMIILLI
ASAFGLYKLHEKSPTFQKRIDALILRLPVFGAIVRKATIARWARTTSTLFAAGVPLVEVLDSVAGASGNILYEEATQDIR
AKVTQGLSLTSSMQSTDMFPNMVIQMAAIGEESGSLDDMLNKAAEFYEDEVDNSVTRLSHLMEPIIMVVLGSLIGILLIA
MYLPLFNLGNVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=558120 KCG55_RS05770 WP_254322302.1 1173756..1174997(-) (pilG) [Neisseria subflava strain HP0015]
ATGGCTCAAGCAGAGCAAAAAAGAAGTCTGTTCGGCTCAAGAAGCAAAGGCAAGCGTTTTACATTTGAAGGAAAAAATAC
CGAGACCGAACGTCTTGTTCGTGGTGAAGTAGTTGCCAAAGACGAAGAAGAAGCACGCAAAAAACTCCAACGCAGAGGCA
TTCGTCCTTTGCGTATCAGCAAAGTCAAAACCGCACGCAAACGCCGTATTACCCAAGAAGACATTACAGTGTTCACCCGC
CAACTGGCAACGATGATGAAGGCAGGCTTACCGCTGATGCAGGCTTTTGAAATCGTTGCGCGCGGCCACTCCAACCCGAG
CATGACCGAAATGCTGATGCAGGTTCGTTCCGATGTCGAACAAGGCAGCGCATTGGGTAAATCGTTCTCCAAATATCCAA
AATATTTCGACCGTTTCTATTGCAATCTGGTCAGCGCAGGCGAGTCCGGCGGCGTATTGGAAAGCCTATTGGACAAACTG
GCTGTTTATAAAGAAAAAACCCAAGCCATTAAGAAAAAGGTTAAAACCGCGCTGACCTACCCGATTGCTATTATCGTGGT
AGCCATCGCGCTTATCTTCATCATGATGATGTTTGTACTGCCTGCCTTTAAAGAAGTTTATGCCAATATGGGTGCAGAGC
TGCCAGACCTTACCCAACTCGTCATGAACTTGTCTGATTTATTTGTCGATTACGGCTGGATTATGATCATCCTTTTGATT
GCTTCCGCCTTCGGCCTGTACAAACTCCATGAGAAATCGCCCACCTTCCAAAAACGAATCGATGCTTTGATTTTGAGGCT
GCCTGTTTTTGGCGCCATCGTCCGAAAAGCGACCATTGCCCGTTGGGCGCGTACGACTTCTACCCTCTTCGCAGCCGGCG
TTCCTTTGGTGGAAGTATTAGATTCAGTTGCAGGCGCATCCGGCAATATTCTCTATGAAGAAGCCACTCAAGACATCCGC
GCCAAGGTAACCCAAGGTCTGTCGCTGACATCCAGTATGCAAAGTACAGATATGTTCCCCAACATGGTGATCCAAATGGC
GGCCATCGGCGAAGAGTCAGGCTCTTTGGACGATATGCTGAACAAAGCAGCCGAATTCTACGAAGATGAAGTAGACAACT
CCGTCACCCGATTGTCTCACTTGATGGAGCCTATCATCATGGTGGTATTGGGTTCGCTCATCGGTATTTTGCTGATTGCC
ATGTATCTGCCGCTGTTTAACTTGGGTAATGTCGTAGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

72.03

97.821

0.705
  pilG Neisseria meningitidis 44/76-A

71.04

97.821

0.695
  pilC Acinetobacter baumannii D1279779

46.734

96.368

0.45
  pilC Legionella pneumophila strain ERS1305867

46.348

96.126

0.446
  pilC Pseudomonas stutzeri DSM 10701

46

96.852

0.446
  pilC Acinetobacter baylyi ADP1

46.231

96.368

0.446
  pilC Vibrio cholerae strain A1552

38.75

96.852

0.375
  pilC Thermus thermophilus HB27

38.619

94.673

0.366