Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KCG55_RS05765 Genome accession   NZ_CP073117
Coordinates   1172867..1173754 (-) Length   295 a.a.
NCBI ID   WP_254322300.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1167867..1178754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS05735 (KCG55_05740) - 1168260..1169267 (+) 1008 WP_254322294.1 IS5 family transposase -
  KCG55_RS05740 (KCG55_05745) ispH 1169450..1170418 (-) 969 WP_254322296.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KCG55_RS05745 (KCG55_05750) lspA 1170432..1170938 (-) 507 WP_254322297.1 signal peptidase II -
  KCG55_RS05750 (KCG55_05755) glyQ 1171087..1171986 (-) 900 WP_070824173.1 glycine--tRNA ligase subunit alpha -
  KCG55_RS05755 (KCG55_05760) yacG 1172068..1172250 (-) 183 WP_003682475.1 DNA gyrase inhibitor YacG -
  KCG55_RS05760 (KCG55_05765) coaE 1172247..1172867 (-) 621 WP_254322299.1 dephospho-CoA kinase -
  KCG55_RS05765 (KCG55_05770) pilD 1172867..1173754 (-) 888 WP_254322300.1 A24 family peptidase Machinery gene
  KCG55_RS05770 (KCG55_05775) pilG 1173756..1174997 (-) 1242 WP_254322302.1 type II secretion system F family protein Machinery gene
  KCG55_RS05775 (KCG55_05780) pilF 1175076..1176755 (-) 1680 WP_254322304.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32396.59 Da        Isoelectric Point: 8.3206

>NTDB_id=558119 KCG55_RS05765 WP_254322300.1 1172867..1173754(-) (pilD) [Neisseria subflava strain HP0015]
MLDSIYSAIDALSVLAPFAIPLAVILGLLIGSFLNVVIYRTPIMMEREWTQFSKEHLGIELTDEEKQPFNLRKPDSRCPK
CKSPIRVWQNIPILSYVFLGGKCHACKTHISIRYPLIELLTGVLFGIVAWQYGWSWATIGGLILTAILIALTFIDADTQY
LPDSLTQPLIWIGLLFNLNDTFVPLHSAVWGAIAGYMSLYTLCAVYKLLTGKIGMGNGDFKLLAALGAWLGVGILPVLIF
MAALVGLVGALIARVGKGQYFAFGPSLAVAGWIILVANAPITQLVQWWLVQSGFR

Nucleotide


Download         Length: 888 bp        

>NTDB_id=558119 KCG55_RS05765 WP_254322300.1 1172867..1173754(-) (pilD) [Neisseria subflava strain HP0015]
ATGCTTGATAGTATTTACTCTGCCATCGACGCCCTCTCCGTTCTTGCGCCATTCGCTATTCCTTTAGCCGTTATTTTAGG
ATTACTGATTGGTAGCTTTCTGAACGTCGTCATTTATCGCACGCCGATAATGATGGAGCGTGAATGGACACAATTTTCCA
AAGAGCATTTGGGCATCGAGCTGACAGATGAAGAAAAACAGCCATTTAATCTACGCAAACCGGATTCACGCTGCCCAAAA
TGCAAAAGTCCGATCAGAGTTTGGCAAAATATACCCATCCTCAGCTATGTTTTCCTAGGTGGGAAATGCCACGCCTGCAA
AACCCATATCAGCATACGCTATCCGTTGATTGAGCTGCTGACAGGTGTCTTATTCGGTATTGTCGCGTGGCAATACGGCT
GGTCATGGGCAACTATTGGCGGATTAATTCTGACTGCCATATTGATTGCGCTGACCTTTATCGATGCCGATACGCAATAT
TTGCCCGACAGCCTGACTCAGCCCCTAATTTGGATCGGTCTGCTATTTAATCTGAATGACACATTCGTGCCCCTGCATTC
AGCCGTTTGGGGAGCGATCGCAGGCTATATGAGCCTTTATACTTTATGCGCCGTCTATAAACTTCTGACCGGTAAAATCG
GCATGGGCAATGGCGACTTCAAACTTTTGGCCGCACTCGGGGCATGGCTGGGCGTAGGTATATTGCCTGTTCTGATCTTC
ATGGCTGCCTTAGTCGGTCTGGTGGGCGCACTCATTGCCCGTGTCGGCAAAGGCCAATATTTTGCTTTTGGTCCCAGCCT
TGCTGTGGCAGGATGGATTATTTTGGTTGCCAATGCACCTATTACCCAACTGGTACAATGGTGGCTCGTACAATCAGGAT
TCCGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-132)

Type IV leader peptidase family (Peptidase_A24)

(142-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

71.378

95.932

0.685
  pilD Vibrio cholerae strain A1552

48.077

88.136

0.424
  pilD Vibrio campbellii strain DS40M4

45.091

93.22

0.42
  pilD Acinetobacter baumannii D1279779

47.41

85.085

0.403
  pilD Acinetobacter nosocomialis M2

47.41

85.085

0.403