Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   KCG56_RS11265 Genome accession   NZ_CP073116
Coordinates   2337149..2338390 (-) Length   413 a.a.
NCBI ID   WP_254321470.1    Uniprot ID   A0A9X9HXW1
Organism   Neisseria subflava strain TT0073     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2332149..2343390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS11235 (KCG56_11265) ispH 2332843..2333811 (-) 969 WP_254321466.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KCG56_RS11240 (KCG56_11270) lspA 2333825..2334331 (-) 507 WP_254321467.1 signal peptidase II -
  KCG56_RS11245 (KCG56_11275) glyQ 2334480..2335379 (-) 900 WP_003685919.1 glycine--tRNA ligase subunit alpha -
  KCG56_RS11250 (KCG56_11280) yacG 2335461..2335643 (-) 183 WP_003682475.1 DNA gyrase inhibitor YacG -
  KCG56_RS11255 (KCG56_11285) coaE 2335640..2336260 (-) 621 WP_254321468.1 dephospho-CoA kinase -
  KCG56_RS11260 (KCG56_11290) pilD 2336260..2337147 (-) 888 WP_254321469.1 A24 family peptidase Machinery gene
  KCG56_RS11265 (KCG56_11295) pilG 2337149..2338390 (-) 1242 WP_254321470.1 type II secretion system F family protein Machinery gene
  KCG56_RS11270 (KCG56_11300) pilF 2338469..2340148 (-) 1680 WP_070824176.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 46095.14 Da        Isoelectric Point: 10.0179

>NTDB_id=558095 KCG56_RS11265 WP_254321470.1 2337149..2338390(-) (pilG) [Neisseria subflava strain TT0073]
MAQAEQKRSLFGSRSKGKRFTFEGKNTETERLVRGEVVAKDEEEARKKLQRRGIRPLRISKVKTARKRRITQEDITVFTR
QLATMMKAGLPLMQAFEIVARGHSNPSMTEMLMQVRSDVEQGSALGKSFSKYPKYFDRFYCNLVSAGESGGVLESLLDKL
AVYKEKTQAIKKKVKTALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMGAELPRLTQLVMNLSDLFVDYGWIMIILLI
VSAFGLYKLHEKSPTFQKRIDALILRLPVFGSIVRKATIARWARTTSTLFAAGVPLVEVLDSVAGASGNILYEEATQDIR
AKVTQGLSLTSSMQSTDMFPNMVIQMAAIGEESGSLDDMLNKAAEFYEDEVDNSVSRLSHLMEPIIMVVLGSLIGILLTA
MYWPLFNLGNVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=558095 KCG56_RS11265 WP_254321470.1 2337149..2338390(-) (pilG) [Neisseria subflava strain TT0073]
ATGGCTCAAGCAGAGCAAAAAAGAAGTCTGTTCGGCTCAAGAAGTAAAGGCAAGCGTTTTACATTTGAAGGAAAAAATAC
CGAGACCGAACGTCTTGTCCGTGGTGAAGTAGTTGCCAAAGACGAAGAAGAAGCACGCAAAAAACTCCAACGCAGAGGCA
TTCGTCCTTTGCGCATCAGCAAAGTTAAAACCGCACGCAAACGCCGTATTACCCAAGAAGACATTACAGTGTTCACCCGC
CAACTGGCAACCATGATGAAGGCAGGCTTACCGCTGATGCAGGCTTTTGAAATCGTTGCGCGCGGCCACTCCAATCCGAG
TATGACTGAAATGCTGATGCAGGTTCGCTCCGATGTCGAACAAGGCAGCGCATTGGGTAAATCGTTCTCCAAATATCCAA
AATATTTCGACCGTTTCTATTGCAATCTGGTCAGCGCAGGCGAGTCCGGCGGCGTATTGGAAAGCTTATTGGACAAACTG
GCTGTCTATAAAGAAAAAACCCAAGCCATTAAGAAAAAAGTCAAAACCGCACTGACCTACCCGATTGCCATTATCGTGGT
GGCGATTGCGCTTATCTTCATCATGATGATGTTTGTACTGCCTGCCTTTAAAGAAGTTTATGCCAATATGGGTGCAGAGC
TGCCACGTCTCACCCAACTTGTTATGAACTTGTCTGATTTATTTGTCGACTATGGCTGGATTATGATCATCCTTTTGATT
GTTTCCGCCTTCGGCCTGTACAAACTCCATGAAAAATCGCCTACCTTCCAAAAACGAATCGATGCTTTGATTTTGAGACT
CCCCGTTTTTGGCTCTATCGTCCGTAAAGCGACCATTGCCCGTTGGGCGCGTACGACTTCTACCCTCTTCGCAGCCGGTG
TTCCTTTGGTGGAAGTATTAGATTCCGTTGCAGGTGCATCCGGTAATATTCTCTATGAAGAAGCTACTCAAGACATCCGC
GCCAAGGTAACCCAAGGTCTGTCGCTGACATCCAGTATGCAAAGTACAGATATGTTCCCCAATATGGTGATCCAAATGGC
GGCCATCGGCGAAGAATCAGGCTCTTTGGACGATATGCTGAACAAAGCAGCCGAATTCTACGAAGATGAAGTAGACAACT
CCGTCTCCCGATTGTCTCACTTGATGGAGCCTATCATCATGGTGGTATTGGGTTCGCTCATCGGTATTTTGCTGACTGCC
ATGTATTGGCCGCTGTTTAACTTGGGTAATGTCGTAGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

71.782

97.821

0.702
  pilG Neisseria meningitidis 44/76-A

70.792

97.821

0.692
  pilC Legionella pneumophila strain ERS1305867

46.096

96.126

0.443
  pilC Acinetobacter baumannii D1279779

45.98

96.368

0.443
  pilC Pseudomonas stutzeri DSM 10701

45.5

96.852

0.441
  pilC Acinetobacter baylyi ADP1

45.477

96.368

0.438
  pilC Vibrio cholerae strain A1552

38.25

96.852

0.37
  pilC Thermus thermophilus HB27

38.107

94.673

0.361