Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   KCG56_RS11260 Genome accession   NZ_CP073116
Coordinates   2336260..2337147 (-) Length   295 a.a.
NCBI ID   WP_254321469.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0073     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2331260..2342147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS11230 (KCG56_11260) ftsZ 2331524..2332723 (+) 1200 WP_063076120.1 cell division protein FtsZ -
  KCG56_RS11235 (KCG56_11265) ispH 2332843..2333811 (-) 969 WP_254321466.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KCG56_RS11240 (KCG56_11270) lspA 2333825..2334331 (-) 507 WP_254321467.1 signal peptidase II -
  KCG56_RS11245 (KCG56_11275) glyQ 2334480..2335379 (-) 900 WP_003685919.1 glycine--tRNA ligase subunit alpha -
  KCG56_RS11250 (KCG56_11280) yacG 2335461..2335643 (-) 183 WP_003682475.1 DNA gyrase inhibitor YacG -
  KCG56_RS11255 (KCG56_11285) coaE 2335640..2336260 (-) 621 WP_254321468.1 dephospho-CoA kinase -
  KCG56_RS11260 (KCG56_11290) pilD 2336260..2337147 (-) 888 WP_254321469.1 A24 family peptidase Machinery gene
  KCG56_RS11265 (KCG56_11295) pilG 2337149..2338390 (-) 1242 WP_254321470.1 type II secretion system F family protein Machinery gene
  KCG56_RS11270 (KCG56_11300) pilF 2338469..2340148 (-) 1680 WP_070824176.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 32217.41 Da        Isoelectric Point: 8.0214

>NTDB_id=558094 KCG56_RS11260 WP_254321469.1 2336260..2337147(-) (pilD) [Neisseria subflava strain TT0073]
MLDSIYSAIDALSVLAPFAIPLAVILGLLIGSFLNVVIYRTPIMMEHEWTQFSKEHLGIELTDEEKQPFNLRKPDSRCPK
CKSPVKPWQNIPILSYILLGGKCHSCKTAIGIRYPLIELLTGILFGIVAWQYGWSWAAIGGLILTAILIALTFIDADTQY
LPDSLTQPLIWIGLLFNLNDTFVPLHSAVWGAIAGYMSLYTLCAVYKLLTGKIGMGNGDFKLLAALGAWLGVGILPVLIF
MAALVGLVGALIARVGKGQYFAFGPSLAVAGWIILVANAPITQLVQWWLVQSGFR

Nucleotide


Download         Length: 888 bp        

>NTDB_id=558094 KCG56_RS11260 WP_254321469.1 2336260..2337147(-) (pilD) [Neisseria subflava strain TT0073]
ATGCTTGATAGTATTTACTCTGCCATCGATGCCCTCTCCGTTCTTGCGCCATTCGCTATTCCTTTAGCCGTTATTTTGGG
ATTGCTGATTGGCAGCTTTCTGAATGTTGTCATTTATCGTACTCCGATAATGATGGAACACGAATGGACACAATTTTCCA
AAGAGCATTTGGGCATCGAGCTGACAGATGAAGAAAAACAGCCATTTAATCTGCGCAAACCGGATTCACGCTGCCCAAAA
TGTAAAAGCCCAGTCAAACCTTGGCAAAACATCCCTATCCTCAGCTATATTTTACTGGGCGGGAAATGCCACTCCTGCAA
AACTGCTATCGGCATACGCTATCCGCTGATTGAGCTGCTGACAGGCATCTTATTCGGTATTGTCGCGTGGCAATACGGCT
GGTCATGGGCAGCTATTGGCGGATTAATTTTGACTGCCATATTGATTGCGCTGACCTTTATCGATGCCGATACGCAATAT
TTACCCGACAGCCTGACTCAGCCCCTAATTTGGATCGGCCTGCTGTTTAATCTGAATGATACATTCGTGCCCCTGCATTC
AGCCGTTTGGGGCGCAATCGCAGGCTATATGAGCCTTTATACTTTATGCGCCGTCTATAAACTTCTGACCGGTAAAATCG
GCATGGGCAATGGCGACTTCAAACTTTTGGCCGCGCTCGGTGCATGGCTGGGCGTAGGGATATTGCCTGTTCTGATCTTC
ATGGCTGCCTTGGTCGGACTGGTGGGCGCACTCATTGCCCGCGTCGGCAAAGGCCAATATTTTGCTTTTGGTCCCAGCCT
TGCTGTGGCAGGATGGATTATTTTGGTTGCCAATGCACCTATTACCCAACTGGTACAATGGTGGCTCGTACAATCAGGAT
TCCGATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-132)

Type IV leader peptidase family (Peptidase_A24)

(142-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

69.965

95.932

0.671
  pilD Vibrio campbellii strain DS40M4

44.364

93.22

0.414
  pilD Vibrio cholerae strain A1552

46.538

88.136

0.41
  pilD Acinetobacter baumannii D1279779

46.215

85.085

0.393
  pilD Acinetobacter nosocomialis M2

46.215

85.085

0.393