Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J8380_RS06110 Genome accession   NZ_CP072800
Coordinates   1205322..1206584 (-) Length   420 a.a.
NCBI ID   WP_210229262.1    Uniprot ID   -
Organism   Candidatus Thiothrix anitrata isolate A52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1200322..1211584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J8380_RS06085 (J8380_06085) opgC 1201596..1202780 (+) 1185 WP_210229253.1 OpgC domain-containing protein -
  J8380_RS06090 (J8380_06090) ubiE 1202798..1203550 (-) 753 WP_210229255.1 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE -
  J8380_RS06095 (J8380_06095) - 1203627..1204013 (+) 387 WP_210229257.1 hypothetical protein -
  J8380_RS06100 (J8380_06100) - 1204109..1204408 (+) 300 WP_210229259.1 hypothetical protein -
  J8380_RS06105 (J8380_06105) - 1204427..1205302 (-) 876 WP_210229261.1 A24 family peptidase -
  J8380_RS06110 (J8380_06110) pilC 1205322..1206584 (-) 1263 WP_210229262.1 type II secretion system F family protein Machinery gene
  J8380_RS06115 (J8380_06115) pilB 1206675..1208384 (-) 1710 WP_210229265.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J8380_RS06120 (J8380_06120) tfpZ 1208696..1209466 (-) 771 WP_210229266.1 TfpX/TfpZ family type IV pilin accessory protein -
  J8380_RS06125 (J8380_06125) - 1209484..1210890 (-) 1407 WP_210229268.1 O-antigen ligase -
  J8380_RS06130 (J8380_06130) pilA2 1211017..1211457 (-) 441 WP_210230560.1 pilin Machinery gene

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46381.43 Da        Isoelectric Point: 10.2083

>NTDB_id=555902 J8380_RS06110 WP_210229262.1 1205322..1206584(-) (pilC) [Candidatus Thiothrix anitrata isolate A52]
MQSLNPSRKQLTRATAVAAPKPVEKPTYVWEGVNRNGVKIRGETQAVNPNWLRAELRRKGINPGRVYRKPRTLFKPAIKP
ADIAHFARQVTTMMRSGVPMVQSLHMIASSGDNPSVRDLVTRIATDIEGGASFGDALARHPRYFDKLFVNLVKAGEQAGT
LETMLDKVATYKEKSEALKAKVKSAMMYPLIVIIAAVVVSSILLIWVIPQFKEVFSSFGADLPAFTLMVISMSDWLKAYW
WIPLIGMIAVGYSFGIARRKSKAFDRFVDLMSLRMPIIGNILNLSAIARFSRTLSTMFAAGVPLVESMDSVAGATGNAVY
EEATLRMQEDISRGVQLNTAMQTTQAFPNFIIQMTRIGEESGRVEEMLAKVADYYEEQVDNLVDTLSKQIEPLIMAVLGV
IVGGLVIAMYLPIFKLGAVV

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=555902 J8380_RS06110 WP_210229262.1 1205322..1206584(-) (pilC) [Candidatus Thiothrix anitrata isolate A52]
ATGCAAAGCCTTAATCCAAGCCGTAAGCAGCTAACACGTGCCACTGCCGTTGCAGCACCCAAGCCTGTAGAAAAACCCAC
CTACGTATGGGAAGGGGTCAATCGCAATGGTGTGAAAATTCGCGGAGAAACCCAAGCCGTCAACCCCAACTGGTTACGTG
CTGAATTGCGCCGCAAAGGTATTAATCCCGGTCGTGTTTACCGCAAACCGCGTACTTTGTTTAAGCCTGCAATCAAACCC
GCTGACATCGCCCATTTTGCACGCCAAGTGACTACCATGATGCGTTCCGGTGTGCCGATGGTGCAGTCATTGCACATGAT
TGCCAGCAGCGGTGACAATCCTTCAGTACGGGATTTGGTGACACGCATTGCCACAGATATTGAGGGTGGCGCAAGTTTTG
GCGATGCCTTGGCACGTCACCCACGCTATTTCGACAAATTATTTGTCAATCTGGTGAAGGCAGGAGAGCAAGCCGGTACG
CTAGAAACCATGCTCGACAAAGTGGCGACCTACAAAGAAAAAAGTGAAGCACTCAAGGCCAAAGTCAAAAGTGCCATGAT
GTACCCGTTGATTGTTATTATTGCAGCAGTGGTCGTCTCAAGCATTTTGTTGATCTGGGTTATTCCGCAATTTAAGGAAG
TTTTCAGCAGTTTTGGGGCGGATTTACCCGCTTTCACCTTAATGGTGATTAGCATGTCAGACTGGCTCAAAGCCTATTGG
TGGATACCGCTGATCGGAATGATTGCGGTTGGCTACAGTTTCGGCATTGCCCGTCGTAAATCTAAAGCCTTTGACCGTTT
TGTCGACCTCATGTCACTGCGGATGCCGATTATTGGCAACATCCTGAACCTGTCGGCGATTGCACGCTTTTCACGCACGT
TATCCACCATGTTTGCAGCAGGTGTGCCGTTGGTGGAGTCGATGGATTCGGTCGCTGGGGCAACTGGCAATGCCGTTTAC
GAAGAAGCAACATTACGGATGCAAGAAGACATCTCACGTGGTGTACAATTAAACACGGCAATGCAAACTACGCAGGCATT
CCCCAATTTCATCATTCAAATGACTCGTATCGGCGAAGAATCTGGGCGCGTCGAGGAAATGCTTGCCAAGGTCGCGGATT
ATTATGAAGAACAAGTGGACAACTTAGTGGATACCTTGTCCAAACAAATAGAGCCGCTGATTATGGCAGTATTAGGGGTA
ATCGTCGGAGGGTTGGTCATTGCGATGTACCTGCCTATTTTCAAATTGGGTGCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(86-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.713

96.19

0.517
  pilC Acinetobacter baylyi ADP1

50.735

97.143

0.493
  pilC Acinetobacter baumannii D1279779

50.627

95

0.481
  pilC Legionella pneumophila strain ERS1305867

49.874

94.524

0.471
  pilG Neisseria meningitidis 44/76-A

42.64

93.81

0.4
  pilG Neisseria gonorrhoeae MS11

42.386

93.81

0.398
  pilC Vibrio campbellii strain DS40M4

39.447

94.762

0.374
  pilC Vibrio cholerae strain A1552

39.394

94.286

0.371