Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J9260_RS17505 Genome accession   NZ_CP072793
Coordinates   3511446..3512705 (-) Length   419 a.a.
NCBI ID   WP_210218986.1    Uniprot ID   A0A975F8P0
Organism   Thiothrix unzii strain A1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3506446..3517705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J9260_RS17480 (J9260_17475) opgC 3507686..3508864 (+) 1179 WP_210218981.1 OpgC domain-containing protein -
  J9260_RS17485 (J9260_17480) ubiE 3508884..3509636 (-) 753 WP_210218982.1 bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE -
  J9260_RS17490 (J9260_17485) - 3509713..3510132 (+) 420 WP_210218983.1 hypothetical protein -
  J9260_RS17495 (J9260_17490) - 3510230..3510529 (+) 300 WP_210218984.1 hypothetical protein -
  J9260_RS17500 (J9260_17495) pilD 3510551..3511426 (-) 876 WP_210218985.1 A24 family peptidase Machinery gene
  J9260_RS17505 (J9260_17500) pilC 3511446..3512705 (-) 1260 WP_210218986.1 type II secretion system F family protein Machinery gene
  J9260_RS17510 (J9260_17505) pilB 3512795..3514504 (-) 1710 WP_210218987.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J9260_RS17515 (J9260_17510) tviB 3514611..3515888 (-) 1278 WP_210218988.1 Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB -
  J9260_RS17520 (J9260_17515) - 3516025..3516960 (+) 936 WP_210218989.1 glycosyltransferase family 4 protein -
  J9260_RS17525 (J9260_17520) - 3516974..3517660 (+) 687 WP_210218990.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46076.03 Da        Isoelectric Point: 10.3116

>NTDB_id=555892 J9260_RS17505 WP_210218986.1 3511446..3512705(-) (pilC) [Thiothrix unzii strain A1]
MQSVNPSRKPLPRAAVPAPKPAAQPTYIWEGVNRNGVKIRGETQAVNPNWLRAELRRKGINPGRVYRKPRTLFKPAIKPA
DIAHFARQVTTMMRSGVPMVQSLHMIASSGDNPSVRDLVKRIAGDIESGASFGDALARHPRYFDKLFVNLVKAGEQAGTL
ETMLDKVATYKEKSESLKAKVKSAMMYPLIVIIAALVVSSILLIWVIPQFKEVFSSFGADLPAFTLMVIGMSDWLKANWW
IPLLGMIVVGYSFSTARRKSKAFDRFVDRVSLSLPIIGNILNLSAIARFARTLATMFAAGVPLVESMDSVAGATGNAVYE
EATLRMQEDISRGVQLNTAMQTTQAFPNFIIQMTRIGEESGRVEDMLSKVADYYEEQVDTLVDTLSKQIEPLIMAVLGVI
VGGLVIAMYLPIFKLGAVV

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=555892 J9260_RS17505 WP_210218986.1 3511446..3512705(-) (pilC) [Thiothrix unzii strain A1]
ATGCAAAGCGTTAATCCAAGCCGTAAGCCCTTGCCGCGTGCTGCTGTACCAGCACCAAAGCCCGCTGCCCAGCCCACCTA
CATCTGGGAAGGTGTTAACCGTAATGGCGTAAAAATTCGTGGAGAAACCCAAGCCGTCAATCCCAACTGGTTACGCGCTG
AATTGCGCCGTAAAGGGATCAATCCCGGTCGGGTATATCGCAAACCGCGTACTTTGTTTAAACCTGCCATCAAACCCGCA
GACATTGCCCATTTTGCGCGGCAAGTTACCACCATGATGCGTTCCGGCGTACCAATGGTGCAATCATTGCACATGATTGC
CAGTAGTGGGGACAACCCTTCGGTACGCGATTTAGTGAAACGCATTGCGGGTGATATTGAAAGCGGCGCAAGTTTCGGTG
ATGCCTTGGCGCGTCATCCGCGTTATTTCGATAAATTATTCGTCAATCTGGTAAAAGCCGGGGAACAAGCCGGTACACTG
GAAACCATGCTCGACAAGGTGGCGACTTACAAAGAAAAGAGCGAGTCGCTCAAAGCCAAAGTCAAAAGTGCCATGATGTA
TCCGCTGATTGTTATTATCGCGGCGTTGGTGGTATCGAGTATTTTGCTGATTTGGGTTATTCCACAATTTAAGGAAGTTT
TCAGCAGTTTCGGTGCCGATTTGCCCGCCTTCACCTTAATGGTCATTGGCATGTCAGACTGGCTCAAAGCGAACTGGTGG
ATACCGCTGCTCGGCATGATTGTGGTTGGCTACAGTTTCAGCACTGCACGCCGCAAATCCAAAGCCTTTGACCGTTTTGT
GGATCGGGTATCACTGAGTCTGCCGATTATTGGCAATATCCTGAACTTGTCAGCAATTGCACGCTTTGCCCGCACCTTAG
CCACCATGTTTGCCGCAGGTGTGCCCTTGGTCGAGTCAATGGATTCGGTCGCTGGGGCAACCGGCAATGCGGTGTATGAA
GAAGCGACGTTACGGATGCAAGAAGACATCTCGCGTGGTGTACAATTAAACACGGCAATGCAAACCACGCAGGCATTCCC
CAATTTCATTATTCAAATGACTCGCATTGGTGAAGAATCCGGGCGGGTGGAAGACATGCTCAGTAAAGTAGCGGATTATT
ACGAAGAGCAAGTGGACACGTTGGTGGACACCTTATCCAAGCAAATTGAACCGCTGATTATGGCGGTACTTGGGGTCATT
GTTGGGGGGTTGGTCATTGCCATGTACCTGCCGATTTTCAAACTGGGTGCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.465

96.42

0.516
  pilC Acinetobacter baylyi ADP1

50.246

96.897

0.487
  pilC Legionella pneumophila strain ERS1305867

50.63

94.749

0.48
  pilC Acinetobacter baumannii D1279779

49.505

96.42

0.477
  pilG Neisseria meningitidis 44/76-A

41.814

94.749

0.396
  pilG Neisseria gonorrhoeae MS11

41.562

94.749

0.394
  pilC Vibrio campbellii strain DS40M4

39.196

94.988

0.372
  pilC Vibrio cholerae strain A1552

39.141

94.511

0.37