Detailed information NTG0555891

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: J9260_RS17500
• Genome accession: NZ_CP072793
• Coordinates: 3510551..3511426 (-)
• Length: 291 a.a.
• NCBI ID: WP_210218985.1
• Uniprot ID: A0A975F9J5
• Organism: Thiothrix unzii strain A1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3505551..3516426

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J9260_RS17470 (J9260_17465)	-	3505581..3505916 (-)	336	WP_210218979.1	hypothetical protein	-
J9260_RS17475 (J9260_17470)	-	3506004..3507545 (-)	1542	WP_210218980.1	glucan biosynthesis protein G	-
J9260_RS17480 (J9260_17475)	opgC	3507686..3508864 (+)	1179	WP_210218981.1	OpgC domain-containing protein	-
J9260_RS17485 (J9260_17480)	ubiE	3508884..3509636 (-)	753	WP_210218982.1	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	-
J9260_RS17490 (J9260_17485)	-	3509713..3510132 (+)	420	WP_210218983.1	hypothetical protein	-
J9260_RS17495 (J9260_17490)	-	3510230..3510529 (+)	300	WP_210218984.1	hypothetical protein	-
J9260_RS17500 (J9260_17495)	pilD	3510551..3511426 (-)	876	WP_210218985.1	A24 family peptidase	Machinery gene
J9260_RS17505 (J9260_17500)	pilC	3511446..3512705 (-)	1260	WP_210218986.1	type II secretion system F family protein	Machinery gene
J9260_RS17510 (J9260_17505)	pilB	3512795..3514504 (-)	1710	WP_210218987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J9260_RS17515 (J9260_17510)	tviB	3514611..3515888 (-)	1278	WP_210218988.1	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	-

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 32573.90 Da
• Isoelectric Point: 6.8361

>NTDB_id=555891 J9260_RS17500 WP_210218985.1 3510551..3511426(-) (pilD) [Thiothrix unzii strain A1]
MELINLLSTSQTWLLVMVGLFSLLIGSFLNVVIYRLPIMLERQWKQDCQEWQNDAPTEVPTSDFNLVVPRSECPTCGHRI
SAWENIPVISYLFLRGKCAGCQTPISIQYPLIELTTALLSVLVAWKTGYGATLPALLGFTWVLVALAMIDAKTMLLPDVL
TYPLLWAGLLLNMDSLFTSLPNAVLGAVWGYLSLWLVFHLFRLLTGKEGMGYGDFKLLAALGAWGGWQILPFVIFAGSLL
GAVFGIAWMIIKREKHSVPMPFGPWLAIAGFIALIWHAEILRYMTQMFMPF

Nucleotide

• Length: 876 bp

>NTDB_id=555891 J9260_RS17500 WP_210218985.1 3510551..3511426(-) (pilD) [Thiothrix unzii strain A1]
ATGGAACTGATAAATTTATTAAGCACCAGCCAAACTTGGCTGTTGGTCATGGTCGGGCTATTTTCTTTACTGATTGGCAG
TTTTTTAAACGTGGTCATCTACCGCCTACCAATCATGCTGGAACGCCAATGGAAACAAGATTGTCAGGAATGGCAAAATG
ACGCACCGACAGAAGTTCCCACCAGCGACTTTAATTTAGTCGTGCCGCGCTCCGAATGCCCGACCTGCGGTCATCGCATC
AGTGCGTGGGAAAACATTCCGGTGATCAGTTACCTGTTTTTGCGGGGGAAATGCGCAGGGTGCCAAACCCCTATTTCCAT
CCAGTACCCACTGATTGAGCTGACAACGGCATTATTGTCGGTATTAGTCGCTTGGAAAACCGGCTACGGGGCAACATTGC
CCGCATTACTCGGTTTTACCTGGGTGCTGGTGGCGTTAGCCATGATTGACGCAAAAACCATGTTGCTCCCTGATGTACTG
ACTTACCCGTTATTATGGGCGGGCTTGCTGCTGAACATGGATAGCTTATTTACCAGCCTGCCCAACGCGGTCTTGGGTGC
GGTATGGGGCTATTTATCGCTGTGGCTGGTGTTTCATTTATTCCGCTTACTAACGGGCAAAGAAGGCATGGGTTACGGTG
ACTTCAAGCTACTCGCGGCACTCGGTGCGTGGGGTGGCTGGCAAATCTTACCGTTTGTGATTTTCGCAGGCTCATTACTC
GGCGCAGTGTTCGGCATCGCTTGGATGATTATCAAACGTGAAAAGCACAGCGTACCCATGCCATTCGGACCTTGGTTAGC
CATTGCCGGATTCATCGCGCTGATTTGGCACGCTGAGATTTTGCGCTACATGACCCAAATGTTTATGCCGTTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (139-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	50.719	95.533	0.485
pilD	Acinetobacter baumannii D1279779	48.057	97.251	0.467
pilD	Acinetobacter nosocomialis M2	47.703	97.251	0.464
pilD	Neisseria gonorrhoeae MS11	50	91.409	0.457
pilD	Vibrio cholerae strain A1552	49.442	92.44	0.457