Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | VPBB_RS11900 | Genome accession | NC_019955 |
| Coordinates | 2628666..2629070 (+) | Length | 134 a.a. |
| NCBI ID | WP_015297250.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus BB22OP | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2623666..2634070
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VPBB_RS11885 (VPBB_2342) | pdhR | 2625699..2626466 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| VPBB_RS11890 (VPBB_2343) | ampD | 2626872..2627423 (-) | 552 | WP_005462574.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| VPBB_RS11895 (VPBB_2344) | nadC | 2627516..2628403 (+) | 888 | WP_015297249.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| VPBB_RS11900 (VPBB_2345) | pilA | 2628666..2629070 (+) | 405 | WP_015297250.1 | pilin | Machinery gene |
| VPBB_RS11905 (VPBB_2346) | pilB | 2629070..2630755 (+) | 1686 | WP_015297251.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| VPBB_RS11910 (VPBB_2347) | pilC | 2630779..2632002 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| VPBB_RS11915 (VPBB_2348) | pilD | 2632067..2632936 (+) | 870 | WP_015297252.1 | A24 family peptidase | Machinery gene |
| VPBB_RS11920 (VPBB_2349) | coaE | 2632937..2633551 (+) | 615 | WP_015297253.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 13659.55 Da Isoelectric Point: 6.4433
>NTDB_id=55491 VPBB_RS11900 WP_015297250.1 2628666..2629070(+) (pilA) [Vibrio parahaemolyticus BB22OP]
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKSEAATALGSLRALVTPAELKLQQDGELSGVVADLGGSAS
HALGAITTSGANISAATLTFTFNTGSLSGDAITLTKTSSGWTCTDGTTVLDNCN
MKHSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVAKSEAATALGSLRALVTPAELKLQQDGELSGVVADLGGSAS
HALGAITTSGANISAATLTFTFNTGSLSGDAITLTKTSSGWTCTDGTTVLDNCN
Nucleotide
Download Length: 405 bp
>NTDB_id=55491 VPBB_RS11900 WP_015297250.1 2628666..2629070(+) (pilA) [Vibrio parahaemolyticus BB22OP]
ATGAAACACAGTAAACAAAAAAAACAACAGGGTTTTACTCTGATCGAATTAATGATTGTGGTGGCGATTATTGGGGTGTT
GTCAGCAATTGCAGTACCTGCTTATCAAAATTATGTCGCTAAAAGTGAAGCGGCAACGGCATTAGGAAGTTTGAGAGCAT
TAGTCACTCCTGCTGAACTTAAACTTCAACAAGATGGAGAGCTATCTGGTGTAGTGGCTGACTTAGGTGGATCTGCATCA
CATGCATTAGGTGCTATTACAACATCTGGTGCTAACATAAGCGCTGCTACTCTAACCTTCACGTTTAATACAGGCTCATT
AAGTGGTGATGCTATCACACTAACCAAAACAAGTTCTGGTTGGACATGTACTGATGGCACTACGGTTTTAGACAACTGTA
ACTAA
ATGAAACACAGTAAACAAAAAAAACAACAGGGTTTTACTCTGATCGAATTAATGATTGTGGTGGCGATTATTGGGGTGTT
GTCAGCAATTGCAGTACCTGCTTATCAAAATTATGTCGCTAAAAGTGAAGCGGCAACGGCATTAGGAAGTTTGAGAGCAT
TAGTCACTCCTGCTGAACTTAAACTTCAACAAGATGGAGAGCTATCTGGTGTAGTGGCTGACTTAGGTGGATCTGCATCA
CATGCATTAGGTGCTATTACAACATCTGGTGCTAACATAAGCGCTGCTACTCTAACCTTCACGTTTAATACAGGCTCATT
AAGTGGTGATGCTATCACACTAACCAAAACAAGTTCTGGTTGGACATGTACTGATGGCACTACGGTTTTAGACAACTGTA
ACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
52.143 |
100 |
0.545 |
| pilA | Pseudomonas aeruginosa PAK |
42.446 |
100 |
0.44 |
| pilA | Vibrio cholerae strain A1552 |
42.029 |
100 |
0.433 |
| pilA | Vibrio cholerae C6706 |
42.029 |
100 |
0.433 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.029 |
100 |
0.433 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
42.188 |
95.522 |
0.403 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.535 |
96.269 |
0.381 |