Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SMUNUM_RS00205 Genome accession   NZ_AP014571
Coordinates   28734..29489 (+) Length   251 a.a.
NCBI ID   WP_002263137.1    Uniprot ID   Q8DWM0
Organism   Streptococcus mutans LP13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 23734..34489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS00185 (SMNUM_0016) mreD 24476..24982 (+) 507 WP_002263141.1 rod shape-determining protein MreD -
  SMUNUM_RS00190 (SMNUM_0017) - 25092..26387 (+) 1296 WP_002264119.1 CHAP domain-containing protein -
  SMUNUM_RS00195 (SMNUM_0018) - 26512..27480 (+) 969 WP_286216835.1 ribose-phosphate diphosphokinase -
  SMUNUM_RS00200 (SMNUM_0019) - 27569..28744 (+) 1176 WP_002263138.1 pyridoxal phosphate-dependent aminotransferase -
  SMUNUM_RS00205 (SMNUM_0020) recO 28734..29489 (+) 756 WP_002263137.1 DNA repair protein RecO Machinery gene
  SMUNUM_RS00210 (SMNUM_0021) plsX 29697..30695 (+) 999 WP_002264116.1 phosphate acyltransferase PlsX -
  SMUNUM_RS00215 (SMNUM_0022) - 30697..30945 (+) 249 WP_002263135.1 acyl carrier protein -
  SMUNUM_RS00220 (SMNUM_0023) - 31125..31754 (+) 630 Protein_22 ATP-binding cassette domain-containing protein -
  SMUNUM_RS00225 (SMNUM_0024) purC 31877..32584 (+) 708 WP_002263133.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29353.88 Da        Isoelectric Point: 6.6577

>NTDB_id=55492 SMUNUM_RS00205 WP_002263137.1 28734..29489(+) (recO) [Streptococcus mutans LP13]
MQTKETRGLVLYNRPFREDDKLVKIFTETSGKHMFFVRHATNSKLSSVIQPLILANFILKINNHGLSYIEDYKGVSLFKE
INADIYKLAYATYLVSLADAAISDAVYDAPLFAFLIKTLELMDEGLDYEILTNIFEIQILDRFGVQLNFHDCVFCHRVGL
AFDFSHRYSGLLCPEHYEKDLYRSHLDPNVPYLLNQFQTLHFDSLKTISVKPDMKQKLRKFIDEVYEDYIGLRLKSKKFI
DDLDHWGQVMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=55492 SMUNUM_RS00205 WP_002263137.1 28734..29489(+) (recO) [Streptococcus mutans LP13]
ATGCAGACTAAAGAAACAAGAGGTTTAGTGCTTTATAATCGGCCATTTAGAGAGGATGATAAGCTGGTTAAAATTTTTAC
GGAAACTTCCGGCAAACACATGTTTTTTGTGCGTCATGCTACTAATTCAAAATTGTCTTCTGTCATTCAACCATTGATTC
TAGCTAATTTTATTTTAAAAATTAATAATCATGGACTTTCTTATATTGAAGATTATAAGGGAGTCTCTCTTTTTAAGGAA
ATTAATGCAGATATTTATAAATTAGCTTATGCTACTTACCTTGTGTCTTTGGCTGATGCTGCTATTTCAGATGCTGTCTA
TGATGCCCCTCTTTTTGCTTTTTTAATTAAGACCCTAGAATTGATGGATGAAGGTCTTGATTATGAAATATTGACCAATA
TTTTTGAAATCCAAATTCTAGATCGCTTTGGCGTTCAACTTAATTTTCATGACTGTGTTTTTTGCCATCGTGTCGGTTTA
GCTTTTGATTTTTCACATCGCTATTCAGGTCTTTTGTGTCCTGAACATTATGAAAAAGATCTTTATCGTAGTCACTTAGA
TCCTAATGTCCCTTACCTTTTGAACCAATTTCAAACTTTACATTTTGATAGCTTAAAGACCATTTCAGTTAAACCTGACA
TGAAACAAAAGCTGAGAAAATTTATTGATGAAGTTTATGAGGACTATATTGGTCTTCGTCTCAAAAGTAAAAAATTTATT
GATGATTTAGATCACTGGGGACAAGTTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DWM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

65.339

100

0.653

Multiple sequence alignment