Detailed information NTG0055494

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: SMUNUM_RS00345
• Genome accession: NZ_AP014571
• Coordinates: 61711..62706 (+)
• Length: 331 a.a.
• NCBI ID: WP_002263402.1
• Uniprot ID: -
• Organism: Streptococcus mutans LP13
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 56711..67706

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SMUNUM_RS00330 (SMNUM_0044)	-	57015..57701 (+)	687	WP_024782098.1	DNA alkylation repair protein	-
SMUNUM_RS00335 (SMNUM_0045)	comR	58087..59001 (+)	915	WP_286216844.1	helix-turn-helix domain-containing protein	Regulator
SMUNUM_RS00340 (SMNUM_0046)	-	59535..61376 (-)	1842	WP_002266377.1	carbohydrate-binding domain-containing protein	-
SMUNUM_RS00345 (SMNUM_0047)	ruvB	61711..62706 (+)	996	WP_002263402.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
SMUNUM_RS00350 (SMNUM_0048)	-	62744..63169 (+)	426	WP_002263403.1	low molecular weight protein-tyrosine-phosphatase	-
SMUNUM_RS00355 (SMNUM_0049)	-	63234..63617 (+)	384	WP_011074470.1	membrane protein	-
SMUNUM_RS00360 (SMNUM_0050)	-	63614..65404 (+)	1791	WP_002263405.1	acyltransferase family protein	-
SMUNUM_RS00365 (SMNUM_0051)	thrC	66086..67570 (+)	1485	WP_002296884.1	threonine synthase	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 37287.75 Da
• Isoelectric Point: 4.7070

>NTDB_id=55494 SMUNUM_RS00345 WP_002263402.1 61711..62706(+) (ruvB) [Streptococcus mutans LP13]
MTRILDNELMGDEEFAERTLRPQYLQEYIGQDKVKDQLKIFIKAAKQRDEALDHVLLFGPPGLGKTTMAFVIANELGVNL
KQTSGPAIEKAGDLVAVLNDLEPGDVLFIDEIHRLPMAVEEVLYSAMEDFYIDIMIGAGETSRSVHLDLPPFTLIGATTR
AGMLSNPLRARFGITGHMEYYTDIDLTEIVERTADIFEMTITHQAALELARRSRGTPRIANRLLKRVRDYAQIMGDGLID
DKITDKALTMLDVDHEGLDYVDQKILKTMIEMYHGGPVGLGTLSVNIAEERETVEDMYEPYLIQKGFIIRTRSGRVATAK
AYEHLGYRYTE

Nucleotide

• Length: 996 bp

>NTDB_id=55494 SMUNUM_RS00345 WP_002263402.1 61711..62706(+) (ruvB) [Streptococcus mutans LP13]
ATGACTAGAATTTTAGATAACGAACTTATGGGTGATGAGGAATTTGCAGAACGCACACTTCGTCCGCAGTATTTACAGGA
ATATATTGGTCAGGATAAGGTTAAAGACCAGCTGAAGATCTTCATCAAAGCAGCTAAACAACGTGATGAGGCTTTGGATC
ATGTCCTTTTATTTGGTCCTCCTGGCCTTGGTAAGACCACCATGGCTTTTGTTATTGCCAATGAATTGGGGGTTAATCTT
AAGCAAACCAGCGGTCCAGCTATTGAAAAAGCTGGTGATTTGGTTGCTGTTTTAAATGATTTAGAGCCTGGGGATGTTCT
TTTTATTGATGAAATTCATCGGCTGCCTATGGCTGTTGAGGAAGTTCTTTATAGTGCCATGGAAGATTTTTATATTGACA
TTATGATTGGTGCAGGAGAAACTTCTCGCAGCGTGCATTTGGATTTGCCGCCTTTTACTTTAATTGGGGCGACAACACGG
GCAGGTATGTTGTCAAATCCTTTGCGTGCGCGTTTTGGGATTACAGGTCATATGGAATATTATACAGATATCGATTTAAC
TGAAATTGTTGAGCGAACAGCGGATATTTTTGAGATGACCATTACCCATCAAGCTGCGTTAGAATTAGCACGGCGTTCCC
GTGGGACTCCGCGTATTGCTAACCGACTCTTAAAACGTGTCCGAGATTATGCCCAAATTATGGGAGATGGTCTTATTGAT
GATAAAATAACAGATAAAGCTTTGACCATGCTTGATGTTGATCATGAAGGCCTTGATTATGTTGATCAGAAGATCCTTAA
GACGATGATTGAGATGTACCATGGCGGGCCTGTTGGTCTGGGGACTCTGTCAGTTAATATTGCCGAGGAACGTGAGACCG
TTGAAGACATGTATGAGCCCTATCTTATTCAAAAAGGATTTATCATACGGACTCGCAGTGGACGTGTAGCCACTGCCAAA
GCTTATGAACATTTGGGTTATCGTTACACAGAATAA

Domains

Predicted by InterProScan.

• RuvB AAA lid domain (AAA_lid_4) (181-254)

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (20-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Streptococcus pneumoniae TIGR4	91.239	100	0.912
ruvB	Streptococcus pneumoniae R6	90.937	100	0.909
ruvB	Streptococcus pneumoniae D39	90.937	100	0.909
ruvB	Bacillus subtilis subsp. subtilis str. 168	60.991	97.583	0.595
ruvB	Helicobacter pylori 26695	50.464	97.583	0.492
ruvB	Synechocystis sp. PCC 6803	50.479	94.562	0.477