Detailed information NTG0055494

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VPBB_RS11915
• Genome accession: NC_019955
• Coordinates: 2632067..2632936 (+)
• Length: 289 a.a.
• NCBI ID: WP_015297252.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus BB22OP
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2627067..2637936

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VPBB_RS11895 (VPBB_2344)	nadC	2627516..2628403 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
VPBB_RS11900 (VPBB_2345)	pilA	2628666..2629070 (+)	405	WP_015297250.1	pilin	Machinery gene
VPBB_RS11905 (VPBB_2346)	pilB	2629070..2630755 (+)	1686	WP_015297251.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VPBB_RS11910 (VPBB_2347)	pilC	2630779..2632002 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
VPBB_RS11915 (VPBB_2348)	pilD	2632067..2632936 (+)	870	WP_015297252.1	A24 family peptidase	Machinery gene
VPBB_RS11920 (VPBB_2349)	coaE	2632937..2633551 (+)	615	WP_015297253.1	dephospho-CoA kinase	-
VPBB_RS11925 (VPBB_2350)	zapD	2633579..2634319 (+)	741	WP_015297254.1	cell division protein ZapD	-
VPBB_RS11930 (VPBB_2351)	yacG	2634388..2634582 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
VPBB_RS11935 (VPBB_2352)	rplS	2634897..2635250 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
VPBB_RS11940 (VPBB_2353)	trmD	2635292..2636035 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
VPBB_RS11945 (VPBB_2354)	rimM	2636063..2636611 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
VPBB_RS11950 (VPBB_2355)	rpsP	2636640..2636888 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32371.47 Da
• Isoelectric Point: 7.1971

>NTDB_id=55494 VPBB_RS11915 WP_015297252.1 2632067..2632936(+) (pilD) [Vibrio parahaemolyticus BB22OP]
MEVLQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=55494 VPBB_RS11915 WP_015297252.1 2632067..2632936(+) (pilD) [Vibrio parahaemolyticus BB22OP]
ATGGAAGTGTTGCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.927	100	0.889
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45