Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | LZ756_RS12065 | Genome accession | NZ_CP090547 |
| Coordinates | 2504729..2505181 (+) | Length | 150 a.a. |
| NCBI ID | WP_020851240.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. sandyi strain OC8 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2499729..2510181
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ756_RS12040 (LZ756_12040) | coaE | 2499829..2500452 (-) | 624 | WP_020851236.1 | dephospho-CoA kinase | - |
| LZ756_RS12045 (LZ756_12045) | pilD | 2500464..2501327 (-) | 864 | WP_004084594.1 | A24 family peptidase | Machinery gene |
| LZ756_RS12050 (LZ756_12050) | pilC | 2501334..2502536 (-) | 1203 | WP_010894959.1 | type II secretion system F family protein | Machinery gene |
| LZ756_RS12055 (LZ756_12055) | pilA/pilAI | 2502978..2503424 (+) | 447 | WP_020851238.1 | pilin | Machinery gene |
| LZ756_RS12060 (LZ756_12060) | - | 2503663..2503890 (-) | 228 | WP_020851239.1 | hypothetical protein | - |
| LZ756_RS12065 (LZ756_12065) | pilA | 2504729..2505181 (+) | 453 | WP_020851240.1 | pilin | Machinery gene |
| LZ756_RS12070 (LZ756_12070) | pilB | 2506028..2507761 (+) | 1734 | WP_020851241.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| LZ756_RS12075 (LZ756_12075) | - | 2507855..2509267 (-) | 1413 | WP_020851242.1 | sigma-54 dependent transcriptional regulator | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 15414.80 Da Isoelectric Point: 8.5081
>NTDB_id=554863 LZ756_RS12065 WP_020851240.1 2504729..2505181(+) (pilA) [Xylella fastidiosa subsp. sandyi strain OC8]
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVAKSQVTAGLAEITPGKAQAEIRIAEARPTTTATDIGLRTATARCNT
IAVSIVTDNPSTIICTLVGNAQVNGQTIRWTRAVDNAAGTRDGGLWTCTTTVAEALRPGGCGATAAAGGG
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVAKSQVTAGLAEITPGKAQAEIRIAEARPTTTATDIGLRTATARCNT
IAVSIVTDNPSTIICTLVGNAQVNGQTIRWTRAVDNAAGTRDGGLWTCTTTVAEALRPGGCGATAAAGGG
Nucleotide
Download Length: 453 bp
>NTDB_id=554863 LZ756_RS12065 WP_020851240.1 2504729..2505181(+) (pilA) [Xylella fastidiosa subsp. sandyi strain OC8]
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATCGCCATCCTGGCAGCGATCGCTCT
GCCGATGTACCAAAATTATGTGGCCAAGTCTCAAGTCACAGCGGGACTGGCCGAAATTACACCCGGCAAAGCACAAGCCG
AAATCCGTATTGCCGAGGCAAGGCCAACAACTACTGCGACCGATATCGGACTGCGCACCGCGACTGCTCGTTGCAACACC
ATTGCTGTCAGCATCGTGACCGATAATCCAAGCACAATCATATGTACGCTTGTTGGTAATGCCCAAGTCAACGGTCAAAC
CATTAGATGGACTCGCGCCGTCGATAACGCCGCAGGCACAAGGGATGGGGGTCTGTGGACCTGTACCACAACCGTTGCCG
AAGCATTGAGACCAGGAGGCTGCGGTGCTACTGCTGCTGCTGGTGGTGGTTAA
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATCGCCATCCTGGCAGCGATCGCTCT
GCCGATGTACCAAAATTATGTGGCCAAGTCTCAAGTCACAGCGGGACTGGCCGAAATTACACCCGGCAAAGCACAAGCCG
AAATCCGTATTGCCGAGGCAAGGCCAACAACTACTGCGACCGATATCGGACTGCGCACCGCGACTGCTCGTTGCAACACC
ATTGCTGTCAGCATCGTGACCGATAATCCAAGCACAATCATATGTACGCTTGTTGGTAATGCCCAAGTCAACGGTCAAAC
CATTAGATGGACTCGCGCCGTCGATAACGCCGCAGGCACAAGGGATGGGGGTCTGTGGACCTGTACCACAACCGTTGCCG
AAGCATTGAGACCAGGAGGCTGCGGTGCTACTGCTGCTGCTGGTGGTGGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
44.079 |
100 |
0.447 |
| pilA | Vibrio cholerae strain A1552 |
44.079 |
100 |
0.447 |
| pilA | Vibrio cholerae C6706 |
44.079 |
100 |
0.447 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
45.833 |
96 |
0.44 |
| pilA | Acinetobacter baumannii strain A118 |
43.836 |
97.333 |
0.427 |
| pilA | Pseudomonas aeruginosa PAK |
38.217 |
100 |
0.4 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.429 |
93.333 |
0.387 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.141 |
94.667 |
0.38 |
| comP | Acinetobacter baylyi ADP1 |
35.762 |
100 |
0.36 |