Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | LZ758_RS11060 | Genome accession | NZ_CP090508 |
| Coordinates | 2371811..2372257 (+) | Length | 148 a.a. |
| NCBI ID | WP_040123054.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. morus strain Riv11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2366811..2377257
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ758_RS11040 (LZ758_11040) | - | 2367059..2368396 (+) | 1338 | WP_004090387.1 | HAMP domain-containing sensor histidine kinase | - |
| LZ758_RS11045 (LZ758_11045) | coaE | 2368663..2369286 (-) | 624 | WP_020851236.1 | dephospho-CoA kinase | - |
| LZ758_RS11050 (LZ758_11050) | pilD | 2369298..2370161 (-) | 864 | WP_004084594.1 | A24 family peptidase | Machinery gene |
| LZ758_RS11055 (LZ758_11055) | pilC | 2370168..2371370 (-) | 1203 | WP_010894959.1 | type II secretion system F family protein | Machinery gene |
| LZ758_RS11060 (LZ758_11060) | pilA | 2371811..2372257 (+) | 447 | WP_040123054.1 | pilin | Machinery gene |
| LZ758_RS11065 (LZ758_11065) | - | 2372502..2372729 (-) | 228 | WP_012338102.1 | hypothetical protein | - |
| LZ758_RS11070 (LZ758_11070) | pilA | 2373562..2373996 (+) | 435 | WP_038228615.1 | pilin | Machinery gene |
| LZ758_RS11075 (LZ758_11075) | pilB | 2374836..2376569 (+) | 1734 | WP_012338105.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15385.62 Da Isoelectric Point: 8.4970
>NTDB_id=554503 LZ758_RS11060 WP_040123054.1 2371811..2372257(+) (pilA) [Xylella fastidiosa subsp. morus strain Riv11]
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQLTAALADITPGKVQAESLIADGKVTSNASDIGLRTDTTRCGI
TVKVEAAGTANITCKVKGNSQVSDKTIAWDRSPDNSAGTNGVNNGGLWTCSTNVTSDALKPSGCIATK
MKKQQGFNLIELMIVIAIIAVLAAIALPMYQNYVARSQLTAALADITPGKVQAESLIADGKVTSNASDIGLRTDTTRCGI
TVKVEAAGTANITCKVKGNSQVSDKTIAWDRSPDNSAGTNGVNNGGLWTCSTNVTSDALKPSGCIATK
Nucleotide
Download Length: 447 bp
>NTDB_id=554503 LZ758_RS11060 WP_040123054.1 2371811..2372257(+) (pilA) [Xylella fastidiosa subsp. morus strain Riv11]
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAACTCACTGCGGCACTTGCCGACATCACGCCGGGCAAAGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGGTTACATCCAATGCGAGTGATATCGGTCTGCGTACCGACACCACTCGTTGTGGAATT
ACCGTTAAAGTCGAGGCCGCTGGCACCGCCAACATCACATGCAAAGTTAAGGGCAACTCTCAAGTCAGTGATAAAACCAT
CGCTTGGGATCGTAGCCCCGATAACTCTGCAGGCACCAATGGCGTCAATAATGGAGGTTTGTGGACCTGCTCAACCAACG
TCACCTCCGATGCACTGAAACCTTCCGGCTGCATTGCCACTAAATAA
ATGAAAAAGCAACAAGGTTTTAACTTAATCGAACTAATGATCGTCATTGCAATCATTGCTGTTCTGGCGGCCATCGCTCT
GCCCATGTACCAAAATTATGTTGCCAGATCCCAACTCACTGCGGCACTTGCCGACATCACGCCGGGCAAAGTGCAAGCCG
AGTCTCTGATTGCTGATGGGAAGGTTACATCCAATGCGAGTGATATCGGTCTGCGTACCGACACCACTCGTTGTGGAATT
ACCGTTAAAGTCGAGGCCGCTGGCACCGCCAACATCACATGCAAAGTTAAGGGCAACTCTCAAGTCAGTGATAAAACCAT
CGCTTGGGATCGTAGCCCCGATAACTCTGCAGGCACCAATGGCGTCAATAATGGAGGTTTGTGGACCTGCTCAACCAACG
TCACCTCCGATGCACTGAAACCTTCCGGCTGCATTGCCACTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
40 |
100 |
0.419 |
| pilA | Vibrio cholerae strain A1552 |
40 |
100 |
0.419 |
| pilA | Vibrio cholerae C6706 |
40 |
100 |
0.419 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.497 |
99.324 |
0.412 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.816 |
99.324 |
0.405 |
| pilA | Acinetobacter baumannii strain A118 |
39.333 |
100 |
0.399 |
| pilA | Pseudomonas aeruginosa PAK |
36.478 |
100 |
0.392 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
36.735 |
99.324 |
0.365 |