Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   J5X98_RS12055 Genome accession   NZ_CP072600
Coordinates   2844859..2845233 (+) Length   124 a.a.
NCBI ID   WP_223050195.1    Uniprot ID   -
Organism   Leptothermofonsia sichuanensis E412     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2839859..2850233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X98_RS12030 (J5X98_12025) - 2839862..2840743 (-) 882 WP_223050191.1 ABC transporter permease -
  J5X98_RS12035 (J5X98_12030) - 2840781..2840933 (-) 153 WP_223050192.1 hypothetical protein -
  J5X98_RS12040 (J5X98_12035) dtd 2841125..2841574 (+) 450 WP_223050193.1 D-aminoacyl-tRNA deacylase -
  J5X98_RS12045 (J5X98_12040) - 2841674..2843236 (-) 1563 WP_390631333.1 BCD family MFS transporter -
  J5X98_RS12050 (J5X98_12045) - 2843400..2844359 (+) 960 WP_223050194.1 aldo/keto reductase -
  J5X98_RS12055 (J5X98_12050) pilH 2844859..2845233 (+) 375 WP_223050195.1 PleD family two-component system response regulator Machinery gene
  J5X98_RS12060 (J5X98_12055) - 2845396..2847051 (+) 1656 WP_223050196.1 deoxyribodipyrimidine photo-lyase -
  J5X98_RS12065 (J5X98_12060) - 2847523..2848443 (-) 921 WP_223050197.1 DMT family transporter -
  J5X98_RS12070 (J5X98_12065) - 2848839..2850230 (+) 1392 WP_223050198.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13941.07 Da        Isoelectric Point: 5.6740

>NTDB_id=554504 J5X98_RS12055 WP_223050195.1 2844859..2845233(+) (pilH) [Leptothermofonsia sichuanensis E412]
MTTVLIVDDSHTVREMLSDQLKRSGFTVVEAADGEEAIEKIKVSSPDLVVTDIVMPRKNGYELCRWIKNDPATRHIPVVM
CTSKSEEFDVYWGMKQGADAYITKPYHPPDMLEAVKKLLSQAKG

Nucleotide


Download         Length: 375 bp        

>NTDB_id=554504 J5X98_RS12055 WP_223050195.1 2844859..2845233(+) (pilH) [Leptothermofonsia sichuanensis E412]
ATGACCACTGTTTTGATTGTTGACGATAGCCATACTGTACGGGAGATGCTCTCGGATCAGTTAAAGCGGAGCGGCTTTAC
TGTCGTTGAAGCCGCAGATGGCGAAGAGGCAATAGAAAAAATCAAGGTCAGTTCTCCTGATCTGGTTGTCACGGATATTG
TAATGCCCCGTAAGAATGGCTACGAACTCTGTCGCTGGATTAAGAACGATCCAGCAACCAGGCATATTCCCGTGGTGATG
TGTACCAGCAAGAGTGAAGAGTTTGATGTTTACTGGGGCATGAAACAGGGAGCTGATGCTTATATTACCAAGCCCTACCA
TCCCCCCGATATGCTGGAAGCAGTCAAGAAACTACTGAGTCAGGCAAAGGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

58.824

95.968

0.565
  pilL-C Synechocystis sp. PCC 6803

47.059

95.968

0.452
  pilG Acinetobacter baumannii strain A118

41.88

94.355

0.395
  vraR Staphylococcus aureus N315

39.655

93.548

0.371
  letA Legionella pneumophila str. Paris

35.433

100

0.363
  letA Legionella pneumophila strain ERS1305867

35.433

100

0.363