Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   J7649_RS09135 Genome accession   NZ_CP072549
Coordinates   1919432..1920661 (+) Length   409 a.a.
NCBI ID   WP_219307525.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain H7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1914432..1925661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7649_RS09090 (J7649_09090) rimP 1914796..1915320 (-) 525 WP_004281103.1 ribosome maturation factor RimP -
  J7649_RS09120 (J7649_09120) secG 1916279..1916608 (-) 330 WP_219307520.1 preprotein translocase subunit SecG -
  J7649_RS09125 (J7649_09125) tpiA 1916622..1917413 (-) 792 WP_219307522.1 triose-phosphate isomerase -
  J7649_RS09130 (J7649_09130) pilB 1917691..1919400 (+) 1710 WP_219307524.1 type IV-A pilus assembly ATPase PilB Machinery gene
  J7649_RS09135 (J7649_09135) pilC 1919432..1920661 (+) 1230 WP_219307525.1 type II secretion system F family protein Machinery gene
  J7649_RS16910 (J7649_09140) pilD 1920661..1921521 (+) 861 WP_219307528.1 prepilin peptidase Machinery gene
  J7649_RS09145 (J7649_09145) coaE 1921523..1922122 (+) 600 WP_219307530.1 dephospho-CoA kinase -
  J7649_RS09150 (J7649_09150) - 1922144..1923067 (-) 924 WP_004644926.1 DMT family transporter -
  J7649_RS09155 (J7649_09155) rlmB 1923074..1923823 (-) 750 WP_005101440.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  J7649_RS09160 (J7649_09160) - 1923960..1924283 (-) 324 WP_004281089.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44912.40 Da        Isoelectric Point: 9.8660

>NTDB_id=554128 J7649_RS09135 WP_219307525.1 1919432..1920661(+) (pilC) [Acinetobacter lwoffii strain H7]
MAAVKKGQMMPIFSYEGIDRKGAKIKGELPAKNMALAKVTLRKQGISIKTIREKKKNILEGLMKKKVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVVVVALIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIAIGAII
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAIQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=554128 J7649_RS09135 WP_219307525.1 1919432..1920661(+) (pilC) [Acinetobacter lwoffii strain H7]
ATGGCAGCAGTAAAGAAAGGCCAGATGATGCCGATCTTCAGCTATGAAGGAATTGATCGCAAAGGGGCAAAGATCAAGGG
GGAATTGCCAGCAAAAAATATGGCTTTGGCCAAGGTCACCCTTCGAAAACAAGGTATCAGCATCAAGACCATTCGGGAAA
AGAAAAAAAATATTCTCGAAGGCTTGATGAAGAAAAAAGTCTCAACACTGGATATTACAATTTTTACCCGACAGTTGGCG
ACCATGATGAAAGCCGGGGTACCACTGGTACAAGGCTTTGAGATTGTCGCAGAAGGTCTGGAAAATCCATCCATGCGTGA
AGTTGTACTGGGAATTAAAGGTGAAGTCGAGGGGGGTAACACTTTCGCTGGAGCACTGCGTAAATATCCACAGTATTTTG
ATAATTTATTTTGCTCTTTAGTTGAATCAGGTGAACAGTCGGGTGCTCTTGAAACTATGCTCGATCGTGTCGCAATTTAT
AAAGAAAAAAGCGAACTGCTCAAGCAAAAAATCAAAAAAGCGATGAAGTATCCAGCTACAGTTGTTGTAGTCGCCCTGAT
TGTTACCATTATCTTGATGGTTAAAGTGGTCCCGGTTTTCCAGGACTTATTCTCTTCATTTGGCGCCGACCTGCCTGCTT
TCACCAAAATGGTAGTGAATATGTCGGAATGGATGCAAAAATATTGGTTCCTGCTGATTATTGCCATTGGCGCCATCATT
ACCGCTTTTCTTGAAGCCAAAAAACGTAGCAAAAAATTCCGCGATTTTCTGGATAAGGCCGCACTCAAAGCACCGATTTT
TGGAGATTTGGTGTATAAAGCGATTATTGCACGTTATAGCCGTACCCTCGCCACGACTTTCGCAGCAGGTGTACCCTTGA
TTGATGCGCTGGAATCCACTGCCGGCGCTACCAATAACGTCGTGTATGAAGATGCCGTGATGAAAATCCGTGAAGATGTC
GCTACTGGTCAACAGCTACAGTTTGCCATGCGGGTTACCAATAAGTTTCCTTCCATGGCCATACAAATGGTCGCAATTGG
TGAAGAGTCAGGTGCGCTAGATGCCATGCTGGACAAAGTAGCCACGCATTATGAAAATGAAGTCGACAATGCAGTTGACG
GCTTAACTTCGATGATGGAGCCGTTAATTATGGCTGTTCTTGGTGTGCTTGTCGGTGGTCTAGTGATCGCCATGTACCTT
CCAATTTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.418

99.511

0.9
  pilC Acinetobacter baylyi ADP1

83.538

99.511

0.831
  pilC Pseudomonas stutzeri DSM 10701

62.06

97.311

0.604
  pilC Legionella pneumophila strain ERS1305867

53.904

97.066

0.523
  pilG Neisseria gonorrhoeae MS11

46.482

97.311

0.452
  pilG Neisseria meningitidis 44/76-A

46.482

97.311

0.452
  pilC Vibrio cholerae strain A1552

43.627

99.756

0.435
  pilC Vibrio campbellii strain DS40M4

41.814

97.066

0.406