NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	J7649_RS16910	Genome accession	NZ_CP072549
Coordinates	1920661..1921521 (+)	Length	286 a.a.
NCBI ID	WP_219307528.1	Uniprot ID	-
Organism	Acinetobacter lwoffii strain H7
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1915661..1926521

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7649_RS09120 (J7649_09120)	secG	1916279..1916608 (-)	330	WP_219307520.1	preprotein translocase subunit SecG	-
J7649_RS09125 (J7649_09125)	tpiA	1916622..1917413 (-)	792	WP_219307522.1	triose-phosphate isomerase	-
J7649_RS09130 (J7649_09130)	pilB	1917691..1919400 (+)	1710	WP_219307524.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J7649_RS09135 (J7649_09135)	pilC	1919432..1920661 (+)	1230	WP_219307525.1	type II secretion system F family protein	Machinery gene
J7649_RS16910 (J7649_09140)	pilD	1920661..1921521 (+)	861	WP_219307528.1	prepilin peptidase	Machinery gene
J7649_RS09145 (J7649_09145)	coaE	1921523..1922122 (+)	600	WP_219307530.1	dephospho-CoA kinase	-
J7649_RS09150 (J7649_09150)	-	1922144..1923067 (-)	924	WP_004644926.1	DMT family transporter	-
J7649_RS09155 (J7649_09155)	rlmB	1923074..1923823 (-)	750	WP_005101440.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
J7649_RS09160 (J7649_09160)	-	1923960..1924283 (-)	324	WP_004281089.1	pyrimidine/purine nucleoside phosphorylase	-
J7649_RS09165 (J7649_09165)	recN	1924725..1926386 (+)	1662	WP_219307532.1	DNA repair protein RecN	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 31980.39 Da Isoelectric Point: 8.1972

                                >NTDB_id=554146 J7649_RS16910 WP_219307528.1 1920661..1921521(+) (pilD) [Acinetobacter lwoffii strain H7]

MQDLIQYFTQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQMFLHPEQPVIDKSKLSLSKPASTCPKCHQP

IRWYQNIPIISWLILCGKCANCLNPISIRYPLVEILTAVCALMVVAVFGPTAQMLFGLILTYVLIALTFIDFDTQLLPDR

YTLPLAALGLGVNSYALYTSPSSAIWGYIIGFLCLWIVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLLLPLIVLLSSL

VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

Download Length: 861 bp

                                >NTDB_id=554146 J7649_RS16910 WP_219307528.1 1920661..1921521(+) (pilD) [Acinetobacter lwoffii strain H7]

ATGCAAGATCTTATTCAATATTTTACTCAAAACCCAACGGCGCTGTATATCGCAGTTGGGCTTTTTAGTTTATGTATAGG

CAGCTTTCTGAATGTAGTGATTTACCGTACGCCCAAGATGATGGAACAGGAATGGCGTACCGATTGTCAGATGTTCTTGC

ATCCGGAACAGCCGGTGATTGATAAAAGTAAACTTAGCCTGAGCAAACCCGCTTCGACTTGTCCTAAATGTCATCAGCCA

ATCCGCTGGTACCAGAATATTCCAATTATCAGCTGGCTGATCTTGTGCGGCAAGTGTGCGAACTGCCTGAATCCCATCAG

CATACGCTATCCTTTAGTTGAGATTTTAACAGCAGTCTGTGCACTGATGGTCGTAGCAGTATTTGGTCCGACTGCACAAA

TGCTGTTTGGCCTGATTCTCACTTATGTGCTGATTGCCCTAACCTTTATCGATTTTGATACTCAGTTATTGCCTGACCGT

TATACACTGCCCTTGGCCGCGCTAGGTTTAGGGGTAAATAGTTATGCACTCTATACCTCCCCAAGCTCTGCCATCTGGGG

CTATATCATTGGTTTTTTGTGTCTATGGATAGTGTATTACCTGTTTAAAATCATTACCGGCAAGGAAGGCATGGGTTATG

GCGATTTTAAATTGCTAGCCGCTTTGGGTGCCTGGATGGGTCCGTTATTACTGCCTTTAATTGTGCTGCTGTCTTCCCTG

GTAGGTGCGATTATTGGCATCATTCTGCTAAAAGTCCGCAAGGAAAATCAGCCTTTTGCCTTTGGTCCCTATATCGCGAT

TGCCGGCTGGATTGCTTTTCTTTGGGGTGAACAAATTATGAAAGTGTATTTAGGTCAATAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	81.053	99.65	0.808
pilD	Acinetobacter baumannii D1279779	80.351	99.65	0.801
pilD	Vibrio cholerae strain A1552	53.383	93.007	0.496
pilD	Vibrio campbellii strain DS40M4	49.823	98.951	0.493
pilD	Neisseria gonorrhoeae MS11	46.863	94.755	0.444

Detailed information NTG0554146