Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   B938_RS08775 Genome accession   NC_019842
Coordinates   1741627..1742877 (+) Length   416 a.a.
NCBI ID   WP_015239878.1    Uniprot ID   -
Organism   Bacillus velezensis AS43.3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1736627..1747877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B938_RS08745 (B938_08665) yfmH 1736711..1737997 (+) 1287 WP_015239876.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  B938_RS08750 (B938_08670) ymfI 1738057..1738785 (+) 729 WP_015239877.1 elongation factor P 5-aminopentanone reductase -
  B938_RS08755 (B938_08675) - 1738861..1739118 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  B938_RS08760 (B938_08680) - 1739246..1740037 (+) 792 WP_007409819.1 DUF3388 domain-containing protein -
  B938_RS08765 (B938_08685) - 1740056..1740955 (+) 900 WP_014417801.1 helix-turn-helix domain-containing protein -
  B938_RS08770 (B938_08690) pgsA 1741028..1741609 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  B938_RS08775 (B938_08695) cinA 1741627..1742877 (+) 1251 WP_015239878.1 competence/damage-inducible protein A Machinery gene
  B938_RS08780 (B938_08700) recA 1743048..1744091 (+) 1044 WP_003154145.1 recombinase RecA Machinery gene
  B938_RS08785 (B938_08705) - 1744259..1745440 (+) 1182 WP_015239879.1 serine hydrolase domain-containing protein -
  B938_RS08790 (B938_08710) rny 1745733..1747292 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45069.42 Da        Isoelectric Point: 5.2580

>NTDB_id=55147 B938_RS08775 WP_015239878.1 1741627..1742877(+) (cinA) [Bacillus velezensis AS43.3]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDASLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDLQEGHAPGRVFIGISAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=55147 B938_RS08775 WP_015239878.1 1741627..1742877(+) (cinA) [Bacillus velezensis AS43.3]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGAAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGTGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCACAGACGAACCCGACGATTG
CGCCGCTTGCCGCTGACGGAGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATGCGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTTA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACACTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTTGCGGGTCCCGACCTGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.904

100

0.899
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus mitis SK321

47.368

100

0.476
  cinA Streptococcus mitis NCTC 12261

47.368

100

0.476
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385

Multiple sequence alignment