Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ANG_RS09560 Genome accession   NZ_AP013072
Coordinates   1913719..1914990 (+) Length   423 a.a.
NCBI ID   WP_003037622.1    Uniprot ID   I0SAK9
Organism   Streptococcus anginosus subsp. whileyi MAS624     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1908719..1919990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANG_RS11215 (ANG_1937) - 1910155..1910313 (-) 159 WP_172636400.1 hypothetical protein -
  ANG_RS09535 (ANG_1938) - 1910480..1911220 (-) 741 WP_003037582.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  ANG_RS09540 (ANG_1939) prmA 1911221..1912174 (-) 954 WP_025271964.1 50S ribosomal protein L11 methyltransferase -
  ANG_RS09545 (ANG_1940) - 1912178..1912657 (-) 480 WP_003037584.1 GNAT family N-acetyltransferase -
  ANG_RS09550 (ANG_1941) - 1912654..1913097 (-) 444 WP_003037586.1 NUDIX hydrolase -
  ANG_RS09555 (ANG_1942) - 1913147..1913617 (-) 471 WP_003037612.1 DUF3013 family protein -
  ANG_RS09560 (ANG_1943) rarA 1913719..1914990 (+) 1272 WP_003037622.1 replication-associated recombination protein A Machinery gene
  ANG_RS09570 (ANG_1944) - 1915418..1916545 (-) 1128 WP_025271965.1 site-specific integrase -
  ANG_RS09575 (ANG_1945) - 1916549..1916731 (-) 183 WP_025271966.1 DUF3173 domain-containing protein -
  ANG_RS09580 (ANG_1946) - 1916753..1917790 (-) 1038 WP_038677344.1 replication initiation protein -
  ANG_RS09585 (ANG_1947) - 1917925..1918194 (-) 270 WP_025271967.1 hypothetical protein -
  ANG_RS09590 (ANG_1948) - 1918412..1919743 (-) 1332 WP_025271968.1 FtsK/SpoIIIE domain-containing protein -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46712.14 Da        Isoelectric Point: 6.4377

>NTDB_id=55148 ANG_RS09560 WP_003037622.1 1913719..1914990(+) (rarA) [Streptococcus anginosus subsp. whileyi MAS624]
MPDNLAIRMRPKNINQVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLTNDDIKQAIQ
TALTDTERGFDFPVQLDDDALDFIATSTNGDLRSAFNSLDLAVLSTSADHAGVRHITLDIMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLIEAGDLPSLARRLTVIAYEDIGLANPDAQIHTVTALEAAQKIGFPEARILIANIV
IDLALSPKSNSAIVAIDKALSDLRQNGNLPIPRHLRDGHYAGSKELGNAQDYKYPHNYPGNWVQQDYLPEKIKNADYFTP
NENGKYERALGMTKNKIEQLKNH

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=55148 ANG_RS09560 WP_003037622.1 1913719..1914990(+) (rarA) [Streptococcus anginosus subsp. whileyi MAS624]
ATGCCAGACAATTTAGCGATTCGCATGCGGCCTAAAAATATCAATCAGGTCATCGGTCAGAAACATCTGGTCGGTGAAGG
AAAAATCATTCGTCGCATGGTGGAAGCCAATCGCCTGTCTTCCATGATTCTCTATGGTCCGCCAGGGATTGGCAAGACTT
CAATTGCTTCGGCTATTGCCGGAACTACCAAATTTGCTTTTCGGACCTTTAATGCTACTGTTGATAGTAAGAAGCGTCTG
CAAGAGATTGCGGAAGAAGCCAAATTCTCTGGTGGTTTGGTGCTGCTGTTAGACGAGATTCATCGCTTGGACAAGACCAA
ACAGGACTTCCTCCTACCGCTCTTAGAAAACGGTCTGGTCATCATGATTGGCGCCACAACAGAAAATCCCTTTTTCTCCG
TCACTCCCGCTATTCGCAGCCGAGTACAGATTTTCGAGCTGGAGCCTCTGACAAATGATGATATTAAACAAGCCATTCAA
ACAGCCCTGACGGACACCGAACGAGGTTTTGATTTTCCTGTCCAGCTAGATGATGACGCTCTGGATTTCATTGCCACTTC
CACGAACGGAGACTTGCGCTCAGCCTTTAATTCTCTAGATTTAGCAGTCCTCTCTACCTCAGCGGATCATGCAGGCGTTC
GCCATATCACTCTGGATATTATGGAAAACAGCCTACAAAAAAGCTACATCACTATGGACAAAGACGGAGACGGTCACTAT
GACGTCCTGTCCGCTTTACAGAAGTCTATTCGCGGGTCTGATGTCAATGCCAGTCTCCATTATGCAGCTCGCTTGATTGA
AGCTGGAGACCTTCCCAGTCTCGCACGACGTCTGACGGTCATCGCTTATGAGGACATTGGTCTGGCAAACCCCGATGCTC
AGATTCATACAGTGACTGCACTTGAAGCCGCTCAGAAAATCGGCTTCCCCGAAGCTCGCATCCTCATTGCCAATATTGTC
ATTGACCTAGCGCTTTCTCCTAAGTCTAATTCTGCCATAGTAGCTATAGATAAAGCTCTTTCTGATTTGCGACAAAATGG
AAACTTACCTATCCCCCGCCATCTACGAGACGGTCACTACGCTGGTAGCAAGGAGCTGGGAAATGCGCAGGATTACAAAT
ATCCACATAACTATCCTGGTAATTGGGTGCAGCAAGACTACCTTCCTGAAAAAATTAAAAATGCCGATTATTTCACTCCG
AACGAAAACGGGAAGTACGAACGAGCCCTTGGCATGACTAAAAATAAGATTGAACAACTCAAAAACCACTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0SAK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.287

98.818

0.596

Multiple sequence alignment