Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J4N37_RS15920 Genome accession   NZ_CP071855
Coordinates   3337809..3338918 (-) Length   369 a.a.
NCBI ID   WP_045386065.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43153     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3332809..3343918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N37_RS15890 (J4N37_15760) hemF 3333337..3334254 (-) 918 WP_039987198.1 oxygen-dependent coproporphyrinogen oxidase -
  J4N37_RS15895 (J4N37_15765) - 3334289..3334846 (-) 558 WP_054824623.1 L-threonylcarbamoyladenylate synthase -
  J4N37_RS15900 (J4N37_15770) purE 3335047..3335532 (+) 486 WP_045386060.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  J4N37_RS15905 (J4N37_15775) - 3335537..3336670 (+) 1134 WP_252041358.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  J4N37_RS15910 (J4N37_15780) - 3336735..3337304 (-) 570 WP_009708006.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  J4N37_RS15915 (J4N37_15785) - 3337327..3337806 (-) 480 WP_005429833.1 DUF494 family protein -
  J4N37_RS15920 (J4N37_15790) dprA 3337809..3338918 (-) 1110 WP_045386065.1 DNA-processing protein DprA Machinery gene
  J4N37_RS15925 (J4N37_15795) - 3338902..3339996 (-) 1095 WP_252041360.1 LysM peptidoglycan-binding domain-containing protein -
  J4N37_RS15930 (J4N37_15800) def 3340135..3340653 (+) 519 WP_010444681.1 peptide deformylase -
  J4N37_RS15935 (J4N37_15805) fmt 3340687..3341634 (+) 948 WP_252041362.1 methionyl-tRNA formyltransferase -
  J4N37_RS15940 (J4N37_15810) rsmB 3341716..3342999 (+) 1284 WP_010444683.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39359.06 Da        Isoelectric Point: 6.3376

>NTDB_id=548435 J4N37_RS15920 WP_045386065.1 3337809..3338918(-) (dprA) [Vibrio sp. SCSIO 43153]
MKPHNDTDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVQYSTEQLQLLGLTAKQLQAWSQVDKEVDACLAWVTASSHHH
ILTLADALYPPLLKQTVAPPPLLFVKGEASCLSLPQIAMVGSRNASVDGLQHARSFASDLVQHDLIVTSGLALGVDGHAH
DGALLAGGKTIAVLGSGLGQVYPARHRGLAQRVTENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=548435 J4N37_RS15920 WP_045386065.1 3337809..3338918(-) (dprA) [Vibrio sp. SCSIO 43153]
ATGAAACCACACAATGATACTGATCTCGCAGCCTGGTTAAAGCTTAGCTGCTTACCGGGCATTGGTGGGGTCAAGATGAA
TAAGCTGCTCAGCAAAGATACGCCGAGCAATATTGTCCAATACTCGACAGAGCAGCTTCAGCTTTTAGGCTTAACGGCAA
AACAGTTGCAAGCCTGGTCGCAGGTCGATAAAGAAGTCGATGCTTGTCTGGCTTGGGTTACTGCATCTTCTCATCATCAT
ATTCTTACTTTGGCGGATGCTTTGTATCCGCCACTCCTTAAACAAACGGTCGCACCGCCTCCTTTACTCTTTGTAAAAGG
AGAGGCGAGTTGTTTATCTCTGCCTCAAATTGCCATGGTTGGCAGTCGTAATGCCAGTGTGGATGGGCTACAACATGCAA
GAAGCTTTGCATCAGACTTGGTACAACATGATCTGATCGTCACCAGTGGTTTAGCATTAGGTGTTGATGGTCACGCCCAT
GATGGCGCGCTCTTAGCTGGCGGTAAAACCATCGCAGTATTGGGTTCGGGATTAGGACAAGTGTACCCAGCAAGACACCG
AGGTTTGGCGCAGCGAGTGACCGAAAATGGAGCGCTTGTTTCAGAGTTTCGTCCAGATGCTAAGCCTCGCGCAGAAAACT
TTCCACGGCGCAATCGAATCATCAGTGGCTTGTCGCTGGGTGTGTTGGTGGTAGAAGCGGCTGAAAAAAGTGGCTCCTTG
ATTACGGCGCGTTATGCTTTAGAACAAGGTCGAGAAGTTTTCGCTCTGCCAGCTTCGATTAATGCACCTAACGCCAGTGG
CGGTAATCAATTGATTCGTAACGGAGCTTGTCTCGTACAAAATACGCAAGAGGTGCTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(307-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

96.477

100

0.965
  dprA Vibrio cholerae strain A1552

58.378

100

0.585
  dprA Glaesserella parasuis strain SC1401

47.467

100

0.482
  dprA Legionella pneumophila strain ERS1305867

46.201

89.16

0.412
  dprA Haemophilus influenzae Rd KW20

43.824

92.141

0.404
  dprA Neisseria meningitidis strain C311

36.829

100

0.39
  dprA Neisseria meningitidis MC58

36.829

100

0.39
  dprA Neisseria gonorrhoeae MS11

35.917

100

0.377
  dprA Neisseria gonorrhoeae strain FA1090

35.659

100

0.374
  dprA Acinetobacter baylyi ADP1

40.179

91.057

0.366