Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   J4N45_RS04225 Genome accession   NZ_CP071850
Coordinates   866418..866711 (+) Length   97 a.a.
NCBI ID   WP_252013739.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43140     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 861418..871711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N45_RS04215 (J4N45_04210) - 863924..864196 (+) 273 WP_006075676.1 HU family DNA-binding protein -
  J4N45_RS04220 (J4N45_04215) ppiD 864382..866241 (+) 1860 WP_252013738.1 peptidylprolyl isomerase -
  J4N45_RS04225 (J4N45_04220) comEA 866418..866711 (+) 294 WP_252013739.1 ComEA family DNA-binding protein Machinery gene
  J4N45_RS04230 (J4N45_04225) rrtA 866743..867285 (-) 543 WP_252013740.1 rhombosortase -
  J4N45_RS04235 (J4N45_04230) - 867284..867925 (+) 642 WP_252013741.1 DTW domain-containing protein -
  J4N45_RS04240 (J4N45_04235) - 867938..869290 (-) 1353 WP_252013742.1 anti-phage deoxyguanosine triphosphatase -
  J4N45_RS04245 (J4N45_04240) yfbR 869306..869890 (-) 585 WP_252013743.1 5'-deoxynucleotidase -
  J4N45_RS04250 (J4N45_04245) - 869972..871186 (-) 1215 WP_234494276.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10544.23 Da        Isoelectric Point: 4.6437

>NTDB_id=548325 J4N45_RS04225 WP_252013739.1 866418..866711(+) (comEA) [Vibrio sp. SCSIO 43140]
MKLITSIWLAIALLVAPIGSLWASEGDKLEGIEITVNINQAEPEELAELLKGIGIDKAQKIVDYREANGKFKSADDLTQV
KGIGAATVEKNRDRIIL

Nucleotide


Download         Length: 294 bp        

>NTDB_id=548325 J4N45_RS04225 WP_252013739.1 866418..866711(+) (comEA) [Vibrio sp. SCSIO 43140]
ATGAAACTAATTACGTCAATCTGGCTTGCTATCGCTTTACTCGTCGCTCCTATAGGCTCTCTTTGGGCCTCTGAAGGTGA
TAAGTTGGAAGGGATAGAGATAACTGTGAATATCAACCAAGCAGAACCAGAGGAGCTTGCGGAGCTTCTCAAAGGTATTG
GAATCGATAAGGCACAAAAGATAGTTGATTATCGAGAAGCCAACGGCAAGTTCAAGTCTGCCGACGATCTCACTCAGGTG
AAAGGCATTGGTGCTGCGACGGTCGAAAAGAATCGCGACCGTATTATTCTATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(35-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

56.701

100

0.567
  comEA Vibrio cholerae C6706

55.67

100

0.557
  comEA Vibrio cholerae strain A1552

55.67

100

0.557
  comEA Vibrio campbellii strain DS40M4

59.091

90.722

0.536
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

49.367

81.443

0.402
  comEA/comE1 Glaesserella parasuis strain SC1401

58.065

63.918

0.371
  comEA Acinetobacter baylyi ADP1

50

74.227

0.371
  comEA Lactococcus lactis subsp. cremoris KW2

45

82.474

0.371
  comEA/celA/cilE Streptococcus mitis NCTC 12261

53.846

67.01

0.361