Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J4N39_RS00140 Genome accession   NZ_CP071848
Coordinates   31361..32458 (+) Length   365 a.a.
NCBI ID   WP_252020900.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43136     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 26361..37458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4N39_RS00120 (J4N39_00120) rsmB 27489..28772 (-) 1284 WP_252020892.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  J4N39_RS00125 (J4N39_00125) fmt 28772..29734 (-) 963 WP_252020894.1 methionyl-tRNA formyltransferase -
  J4N39_RS00130 (J4N39_00130) def 29748..30260 (-) 513 WP_252020896.1 peptide deformylase -
  J4N39_RS00135 (J4N39_00135) - 30378..31364 (+) 987 WP_252020898.1 LysM domain-containing protein -
  J4N39_RS00140 (J4N39_00140) dprA 31361..32458 (+) 1098 WP_252020900.1 DNA-processing protein DprA Machinery gene
  J4N39_RS00145 (J4N39_00145) - 32461..32934 (+) 474 WP_252020902.1 DUF494 family protein -
  J4N39_RS00150 (J4N39_00150) - 32935..33495 (+) 561 WP_252020904.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  J4N39_RS00155 (J4N39_00155) - 33556..34668 (-) 1113 WP_252020906.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  J4N39_RS00160 (J4N39_00160) purE 34673..35158 (-) 486 WP_252020908.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  J4N39_RS00165 (J4N39_00165) - 35353..35910 (+) 558 WP_252020910.1 L-threonylcarbamoyladenylate synthase -
  J4N39_RS00170 (J4N39_00170) hemF 35996..36910 (+) 915 WP_252020912.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39004.43 Da        Isoelectric Point: 6.4982

>NTDB_id=548271 J4N39_RS00140 WP_252020900.1 31361..32458(+) (dprA) [Vibrio sp. SCSIO 43136]
MNSPDIWIRLCAAPGLGAVKVAKLVAKVGAKQLAAADQSELATYGLSTTQTKVVSDHNHPSVVSALEWQQASTEHHIITL
DSVHYPPLLAQAPAAPPVLYVKGDLDTLKQPQIAIVGSRNASPDGLDNAYHFAHHLAKSGFTITSGLALGIDGRAHKGAL
DAQGTTVAALGCGLNRLYPAKHKRLSQQVAENGALVSELPPDTPPRADFFPRRNRIISGLSAGVLVIEAAQKSGSLITAR
YALEQGREVFALPGSIHNPNARGCNDLIRDGASLIQCSQQLLEEVESLVTWSISQQTSIFEVEDDVQELPFPQLMANVGF
EPTPVDILAQRTHIPVHEVMMQLLELELDGHVAAVPGGYIRKGRG

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=548271 J4N39_RS00140 WP_252020900.1 31361..32458(+) (dprA) [Vibrio sp. SCSIO 43136]
GTGAATTCACCTGATATTTGGATTCGCTTGTGCGCCGCTCCCGGTTTAGGCGCTGTAAAGGTCGCCAAACTGGTGGCTAA
AGTCGGTGCCAAGCAGTTAGCTGCCGCCGATCAAAGCGAGCTTGCCACCTACGGCTTATCAACCACTCAAACTAAGGTAG
TGTCAGATCACAATCACCCCAGTGTTGTGAGTGCACTGGAGTGGCAACAAGCGAGTACAGAGCATCACATTATTACCCTA
GACAGCGTGCACTATCCGCCATTGCTGGCACAGGCGCCAGCAGCGCCTCCGGTGCTATACGTCAAAGGTGACCTAGATAC
CTTAAAGCAGCCACAGATAGCCATTGTCGGCAGTCGTAACGCCTCTCCGGATGGGCTCGACAACGCTTACCATTTTGCCC
ACCACTTAGCAAAAAGCGGGTTCACCATCACCAGTGGCTTAGCGTTAGGCATTGATGGCCGAGCACATAAAGGTGCACTT
GATGCGCAAGGCACGACGGTCGCCGCACTAGGTTGTGGGCTCAATAGGCTCTACCCAGCTAAACATAAGCGGTTATCTCA
GCAAGTTGCAGAAAATGGTGCCTTGGTATCAGAATTGCCACCCGATACACCGCCAAGAGCGGATTTCTTTCCACGTCGCA
ATCGAATTATCAGTGGCTTATCTGCTGGGGTGCTGGTGATTGAAGCAGCGCAAAAGAGTGGCTCTCTCATCACCGCAAGA
TACGCACTGGAGCAAGGGCGAGAGGTGTTTGCCTTACCCGGTTCCATTCATAACCCCAACGCACGAGGGTGTAACGACTT
GATAAGAGATGGCGCTTCGCTTATCCAGTGTAGTCAACAGTTACTCGAAGAAGTTGAATCTTTGGTGACATGGTCAATAA
GCCAACAAACATCTATATTTGAAGTAGAAGACGATGTACAAGAATTGCCATTTCCTCAACTAATGGCTAACGTAGGGTTT
GAACCAACACCCGTTGATATTCTTGCACAGCGCACCCATATACCTGTGCATGAAGTCATGATGCAACTGCTGGAGCTTGA
GCTCGATGGGCACGTTGCTGCTGTACCTGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-276)

DprA winged helix domain (DprA_WH)

(313-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

59.889

98.356

0.589
  dprA Vibrio cholerae strain A1552

52.893

99.452

0.526
  dprA Glaesserella parasuis strain SC1401

43.902

100

0.444
  dprA Legionella pneumophila strain ERS1305867

45.758

90.411

0.414
  dprA Haemophilus influenzae Rd KW20

43.824

93.151

0.408
  dprA Neisseria gonorrhoeae strain FA1090

36.75

100

0.403
  dprA Neisseria meningitidis strain C311

36.658

100

0.403
  dprA Neisseria meningitidis MC58

36.658

100

0.403
  dprA Neisseria gonorrhoeae MS11

36.5

100

0.4
  dprA Acinetobacter baumannii strain A118

41.945

90.137

0.378