Detailed information NTG0547759

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: J2887_RS14210
• Genome accession: NZ_CP071785
• Coordinates: 3123289..3124506 (+)
• Length: 405 a.a.
• NCBI ID: WP_227171760.1
• Uniprot ID: -
• Organism: Marinobacter sp. CA1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3118289..3129506

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J2887_RS14190 (J2887_14155)	-	3118733..3120658 (-)	1926	WP_227171758.1	hypothetical protein	-
J2887_RS14195 (J2887_14160)	-	3120743..3121231 (-)	489	WP_324197216.1	pilin	-
J2887_RS14205 (J2887_14165)	pilB	3121568..3123286 (+)	1719	WP_227171759.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J2887_RS14210 (J2887_14170)	pilC	3123289..3124506 (+)	1218	WP_227171760.1	type II secretion system F family protein	Machinery gene
J2887_RS14215 (J2887_14175)	pilD	3124513..3125382 (+)	870	WP_227171761.1	prepilin peptidase	Machinery gene
J2887_RS14220 (J2887_14180)	coaE	3125379..3125996 (+)	618	WP_227171762.1	dephospho-CoA kinase	-
J2887_RS14225 (J2887_14185)	-	3125974..3127128 (+)	1155	WP_227171763.1	hypothetical protein	-
J2887_RS14230 (J2887_14190)	tsaA	3127125..3127961 (+)	837	WP_227171764.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44230.97 Da
• Isoelectric Point: 9.5248

>NTDB_id=547759 J2887_RS14210 WP_227171760.1 3123289..3124506(+) (pilC) [Marinobacter sp. CA1]
MAEKTQKLSTFTWEGKDRRGSKAKGEIAGVSTSLVKAQLRKQGITPEKVKKKAKPLFGGSSKITPFDIAMLTRQMATMMK
AGVPLVQSFDIVADGLDNKGLQDLILTIRNDVASGASFASALSRHPKHFNELYCNLVDSGEKAGALEQMLDRIATYLEKT
ETLKKKVKKAMTYPIAVIVVAIIVTAILLIKVVPQFEDLFHGFGAELPAFTQFIIKISNWLQEWWFIVLFAIVASIFLFR
EMKARSKKFSDLVDKYVLKLPVVGEILDKSAVARFGRVLSTTFASGVPLVDALESVAGATGNAVYRDGITRIRDEVSGGT
QLQASMRSTGIFPVMAVQLTAIGEESGNLDAMLEKVADHYESVVDDMVDNLTALMEPMIMAVLGVLVGGLIIGMYLPIFQ
MGQVV

Nucleotide

• Length: 1218 bp

>NTDB_id=547759 J2887_RS14210 WP_227171760.1 3123289..3124506(+) (pilC) [Marinobacter sp. CA1]
ATGGCAGAGAAAACTCAAAAGCTGTCCACTTTCACGTGGGAAGGCAAGGATCGCAGGGGCAGCAAGGCCAAAGGTGAAAT
TGCGGGCGTGAGCACTTCGCTTGTGAAAGCCCAGCTCAGAAAGCAGGGGATCACACCGGAAAAGGTCAAAAAGAAGGCCA
AACCGTTATTTGGTGGCTCCAGCAAAATTACGCCCTTTGACATTGCGATGCTGACACGGCAAATGGCAACAATGATGAAG
GCCGGGGTACCGCTGGTACAGAGCTTCGACATTGTGGCGGACGGCCTGGATAACAAGGGGCTTCAAGACCTGATACTGAC
GATCCGAAACGACGTTGCCTCCGGCGCCAGTTTTGCAAGCGCGTTGAGTAGGCACCCAAAGCATTTCAATGAGCTCTATT
GCAACTTGGTTGACTCCGGTGAGAAAGCTGGTGCTCTTGAGCAAATGTTGGACAGAATCGCGACCTATCTTGAGAAGACA
GAAACTCTCAAGAAAAAGGTCAAGAAAGCAATGACATATCCAATTGCAGTGATCGTGGTCGCAATTATTGTGACGGCCAT
TCTGCTGATCAAGGTCGTGCCACAGTTTGAAGATCTGTTTCACGGCTTCGGCGCCGAATTGCCGGCGTTCACTCAATTCA
TTATCAAAATATCGAACTGGCTCCAGGAATGGTGGTTTATCGTTCTGTTTGCTATTGTGGCTTCCATTTTCCTCTTCCGA
GAAATGAAAGCCCGATCCAAAAAGTTTTCGGACCTTGTTGACAAGTATGTACTGAAACTACCTGTCGTAGGTGAGATTCT
TGATAAATCCGCAGTTGCGCGATTTGGCCGCGTACTTTCAACGACCTTTGCGTCAGGGGTGCCGCTCGTTGATGCTCTCG
AATCGGTCGCAGGTGCGACCGGGAATGCGGTCTATCGAGATGGTATTACCCGAATTCGCGATGAAGTTTCCGGTGGTACC
CAGCTCCAGGCATCGATGCGCTCGACCGGTATTTTTCCCGTAATGGCAGTACAGCTTACAGCTATCGGGGAAGAGTCCGG
TAACCTCGACGCGATGCTCGAGAAAGTTGCCGACCATTATGAATCTGTCGTTGATGACATGGTCGACAACCTGACCGCGC
TGATGGAGCCCATGATCATGGCAGTCCTGGGCGTACTGGTCGGCGGTCTCATTATCGGTATGTACCTCCCAATCTTCCAG
ATGGGTCAGGTGGTCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (277-397)

• Type II secretion system (T2SS), protein F (T2SSF) (72-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	65.432	100	0.654
pilC	Acinetobacter baumannii D1279779	57.037	100	0.57
pilC	Acinetobacter baylyi ADP1	56.404	100	0.565
pilC	Legionella pneumophila strain ERS1305867	53.695	100	0.538
pilG	Neisseria gonorrhoeae MS11	42.822	99.753	0.427
pilG	Neisseria meningitidis 44/76-A	42.822	99.753	0.427
pilC	Vibrio cholerae strain A1552	38.519	100	0.385
pilC	Vibrio campbellii strain DS40M4	37	98.765	0.365