Detailed information NTG0547284

Bioinformatically predicted

Overview

• Name: comGB
• Type: Machinery gene
• Locus tag: J3S98_RS03195
• Genome accession: NZ_CP071729
• Coordinates: 667299..668324 (+)
• Length: 341 a.a.
• NCBI ID: WP_050574185.1
• Uniprot ID: -
• Organism: Lactococcus cremoris strain FM-YL11
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 662299..673324

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J3S98_RS03185 (J3S98_03185)	-	662510..666304 (+)	3795	Protein_604	PolC-type DNA polymerase III	-
J3S98_RS03190 (J3S98_03190)	comGA	666419..667399 (+)	981	WP_021164974.1	competence type IV pilus ATPase ComGA	Machinery gene
J3S98_RS03195 (J3S98_03195)	comGB	667299..668324 (+)	1026	WP_050574185.1	competence type IV pilus assembly protein ComGB	Machinery gene
J3S98_RS03200 (J3S98_03200)	comGC	668369..668719 (+)	351	WP_050574187.1	competence type IV pilus major pilin ComGC	Machinery gene
J3S98_RS12270	comGD	668921..669109 (+)	189	WP_014573336.1	hypothetical protein	Machinery gene
J3S98_RS03210 (J3S98_03210)	comGE	669141..669377 (+)	237	WP_014573335.1	competence type IV pilus minor pilin ComGE	Machinery gene
J3S98_RS03215 (J3S98_03215)	comGF	669340..669786 (+)	447	WP_011836043.1	competence type IV pilus minor pilin ComGF	Machinery gene
J3S98_RS03220 (J3S98_03220)	comGG	669882..670109 (+)	228	WP_228764408.1	competence protein ComGG	Machinery gene
J3S98_RS03225 (J3S98_03225)	-	670189..670626 (+)	438	WP_011677180.1	zinc-dependent MarR family transcriptional regulator	-
J3S98_RS03230 (J3S98_03230)	-	670623..671465 (+)	843	WP_021164979.1	zinc ABC transporter substrate-binding protein	-
J3S98_RS03235 (J3S98_03235)	-	671644..672381 (+)	738	WP_011677178.1	metal ABC transporter ATP-binding protein	-
J3S98_RS03240 (J3S98_03240)	-	672374..673183 (+)	810	WP_011677177.1	metal ABC transporter permease	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 38393.18 Da
• Isoelectric Point: 9.9840

>NTDB_id=547284 J3S98_RS03195 WP_050574185.1 667299..668324(+) (comGB) [Lactococcus cremoris strain FM-YL11]
MQTDILRLLRPKGKKLALIKQAKLIQLMGNLLNNGFHLGEVINFLALSKLVEKEFVFKMHQGLSSGNSLSEILDSLSCSK
NVVTQLALVEVHGNLVGTMQLVELHLKKQLKVKKKLIEVATYPVVLLVFLIGIMWGLKNYLLPQIDKGNNFATLLINHLP
LVFFSVGALIVLLTSLSIIIFKHLSALTNFTFLVKVPLVSSFIRLYLTAYFSREWGNLIAQGVELRQIIELMKKQKIRIF
AEVGIKLDLGLKAGQNFEQAVSHFSIFLPELSLMIEYGAIKDKLGLELSVYADECWEQFFSKIDRLMQLIQPLIFIFVAL
MIVLLYAAMSLPIYSNMGSGI

Nucleotide

• Length: 1026 bp

>NTDB_id=547284 J3S98_RS03195 WP_050574185.1 667299..668324(+) (comGB) [Lactococcus cremoris strain FM-YL11]
ATGCAAACGGACATCTTACGGCTATTGAGGCCGAAAGGGAAAAAATTAGCATTAATCAAGCAAGCAAAATTGATACAACT
GATGGGGAATCTTTTGAATAATGGTTTCCATTTGGGAGAAGTTATCAATTTTTTAGCTTTATCAAAATTAGTAGAAAAAG
AGTTTGTATTCAAAATGCACCAAGGTCTCAGTTCTGGAAATTCATTATCTGAAATTTTAGATAGTCTCTCTTGTTCTAAA
AATGTTGTGACACAACTTGCTTTGGTAGAAGTGCATGGGAATTTAGTAGGAACCATGCAATTGGTAGAACTGCATTTAAA
AAAGCAGCTTAAGGTCAAAAAGAAATTAATTGAAGTGGCAACTTATCCAGTTGTATTGTTGGTATTTCTCATTGGAATTA
TGTGGGGCTTGAAAAATTATTTATTACCTCAAATTGATAAGGGAAATAATTTTGCTACTTTATTAATTAATCATTTACCG
CTAGTATTTTTTTCTGTTGGTGCTTTAATCGTTTTACTGACAAGTTTATCAATAATAATATTCAAACATCTTTCAGCACT
CACTAATTTTACTTTTTTGGTTAAAGTTCCATTAGTAAGTTCTTTTATCCGCTTGTATTTGACCGCTTATTTCTCCAGAG
AATGGGGAAATTTAATTGCTCAAGGAGTTGAATTGCGACAAATAATAGAATTGATGAAAAAGCAGAAAATTCGCATTTTT
GCGGAAGTTGGAATTAAACTTGATTTGGGTTTGAAGGCTGGTCAGAATTTTGAGCAAGCTGTCAGTCATTTTTCGATTTT
TTTACCAGAACTTTCTTTGATGATTGAGTACGGCGCGATTAAAGATAAATTAGGGTTGGAGCTTTCTGTTTATGCTGATG
AATGTTGGGAACAATTCTTTTCTAAGATAGACCGTCTAATGCAATTAATACAACCCCTTATTTTTATTTTTGTTGCTTTG
ATGATTGTCTTATTGTATGCAGCGATGTCGTTACCCATTTATTCTAATATGGGTTCTGGAATTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (211-332)

• Type II secretion system (T2SS), protein F (T2SSF) (25-143)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGB	Lactococcus lactis subsp. cremoris KW2	97.654	100	0.977
comYB	Streptococcus gordonii str. Challis substr. CH1	51.039	98.827	0.504
comGB/cglB	Streptococcus pneumoniae D39	50.299	97.947	0.493
comGB/cglB	Streptococcus pneumoniae R6	50.299	97.947	0.493
comGB/cglB	Streptococcus pneumoniae Rx1	50.299	97.947	0.493
comGB/cglB	Streptococcus pneumoniae TIGR4	50.299	97.947	0.493
comGB/cglB	Streptococcus mitis SK321	50	97.947	0.49
comGB/cglB	Streptococcus mitis NCTC 12261	49.102	97.947	0.481
comYB	Streptococcus mutans UA140	50.955	92.082	0.469
comYB	Streptococcus mutans UA159	50.318	92.082	0.463