Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   J3S98_RS12270 Genome accession   NZ_CP071729
Coordinates   668921..669109 (+) Length   62 a.a.
NCBI ID   WP_014573336.1    Uniprot ID   -
Organism   Lactococcus cremoris strain FM-YL11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 663921..674109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3S98_RS03190 (J3S98_03190) comGA 666419..667399 (+) 981 WP_021164974.1 competence type IV pilus ATPase ComGA Machinery gene
  J3S98_RS03195 (J3S98_03195) comGB 667299..668324 (+) 1026 WP_050574185.1 competence type IV pilus assembly protein ComGB Machinery gene
  J3S98_RS03200 (J3S98_03200) comGC 668369..668719 (+) 351 WP_050574187.1 competence type IV pilus major pilin ComGC Machinery gene
  J3S98_RS12270 comGD 668921..669109 (+) 189 WP_014573336.1 hypothetical protein Machinery gene
  J3S98_RS03210 (J3S98_03210) comGE 669141..669377 (+) 237 WP_014573335.1 competence type IV pilus minor pilin ComGE Machinery gene
  J3S98_RS03215 (J3S98_03215) comGF 669340..669786 (+) 447 WP_011836043.1 competence type IV pilus minor pilin ComGF Machinery gene
  J3S98_RS03220 (J3S98_03220) comGG 669882..670109 (+) 228 WP_228764408.1 competence protein ComGG Machinery gene
  J3S98_RS03225 (J3S98_03225) - 670189..670626 (+) 438 WP_011677180.1 zinc-dependent MarR family transcriptional regulator -
  J3S98_RS03230 (J3S98_03230) - 670623..671465 (+) 843 WP_021164979.1 zinc ABC transporter substrate-binding protein -
  J3S98_RS03235 (J3S98_03235) - 671644..672381 (+) 738 WP_011677178.1 metal ABC transporter ATP-binding protein -
  J3S98_RS03240 (J3S98_03240) - 672374..673183 (+) 810 WP_011677177.1 metal ABC transporter permease -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 7336.65 Da        Isoelectric Point: 8.3463

>NTDB_id=547318 J3S98_RS12270 WP_014573336.1 668921..669109(+) (comGD) [Lactococcus cremoris strain FM-YL11]
MIYENKEIDIPKEVEMAEFLIIFDEKGGNSSLQKIKVYLPYEKKTILYQMEMGSGKYKKKIN

Nucleotide


Download         Length: 189 bp        

>NTDB_id=547318 J3S98_RS12270 WP_014573336.1 668921..669109(+) (comGD) [Lactococcus cremoris strain FM-YL11]
TTGATTTATGAAAACAAAGAGATAGATATTCCCAAAGAGGTTGAAATGGCAGAATTTTTGATTATATTTGATGAGAAAGG
GGGGAACTCAAGTTTACAGAAAATCAAAGTTTATTTACCTTATGAGAAGAAAACAATTTTATATCAAATGGAGATGGGGA
GTGGAAAATATAAAAAGAAAATCAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

93.548

100

0.935
  comYD Streptococcus mutans UA140

43.396

85.484

0.371
  comYD Streptococcus mutans UA159

43.396

85.484

0.371