Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   J3S98_RS03220 Genome accession   NZ_CP071729
Coordinates   669882..670109 (+) Length   75 a.a.
NCBI ID   WP_228764408.1    Uniprot ID   -
Organism   Lactococcus cremoris strain FM-YL11     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 670189..674649 669882..670109 flank 80


Gene organization within MGE regions


Location: 669882..674649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3S98_RS03220 (J3S98_03220) comGG 669882..670109 (+) 228 WP_228764408.1 competence protein ComGG Machinery gene
  J3S98_RS03225 (J3S98_03225) - 670189..670626 (+) 438 WP_011677180.1 zinc-dependent MarR family transcriptional regulator -
  J3S98_RS03230 (J3S98_03230) - 670623..671465 (+) 843 WP_021164979.1 zinc ABC transporter substrate-binding protein -
  J3S98_RS03235 (J3S98_03235) - 671644..672381 (+) 738 WP_011677178.1 metal ABC transporter ATP-binding protein -
  J3S98_RS03240 (J3S98_03240) - 672374..673183 (+) 810 WP_011677177.1 metal ABC transporter permease -
  J3S98_RS03245 (J3S98_03245) - 673256..674649 (+) 1394 WP_207873735.1 IS3 family transposase -

Sequence

Protein


Download         Length: 75 a.a.        Molecular weight: 8406.73 Da        Isoelectric Point: 9.0864

>NTDB_id=547288 J3S98_RS03220 WP_228764408.1 669882..670109(+) (comGG) [Lactococcus cremoris strain FM-YL11]
MKIEKERLTAELMVSLALKKDLKTSGQLNFDCGNLTYKLLTDLSADSTSGGQTVSNKTYCFDVRLKDGRIYQIVK

Nucleotide


Download         Length: 228 bp        

>NTDB_id=547288 J3S98_RS03220 WP_228764408.1 669882..670109(+) (comGG) [Lactococcus cremoris strain FM-YL11]
TTGAAAATAGAAAAGGAGCGACTGACAGCCGAATTAATGGTTTCATTGGCTCTTAAAAAGGATTTGAAAACGAGTGGTCA
ACTTAATTTTGATTGTGGAAATTTAACTTACAAATTACTGACAGATCTGTCAGCTGATTCAACTAGCGGTGGTCAAACTG
TTAGTAATAAAACTTATTGTTTTGATGTTCGGCTTAAGGATGGAAGAATTTATCAAATAGTAAAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Lactococcus lactis subsp. cremoris KW2

96

100

0.96