Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | J3S98_RS00285 | Genome accession | NZ_CP071729 |
| Coordinates | 60097..60486 (-) | Length | 129 a.a. |
| NCBI ID | WP_021165898.1 | Uniprot ID | A0A166Z4Y5 |
| Organism | Lactococcus cremoris strain FM-YL11 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 55097..65486
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J3S98_RS00265 (J3S98_00265) | - | 55499..56926 (+) | 1428 | WP_011675468.1 | cell wall metabolism sensor histidine kinase WalK | - |
| J3S98_RS00270 (J3S98_00270) | - | 57116..57927 (+) | 812 | Protein_51 | MBL fold metallo-hydrolase | - |
| J3S98_RS00275 (J3S98_00275) | groL | 57979..59607 (-) | 1629 | WP_021213999.1 | chaperonin GroEL | - |
| J3S98_RS00280 (J3S98_00280) | groES | 59694..59978 (-) | 285 | WP_011675464.1 | co-chaperone GroES | - |
| J3S98_RS00285 (J3S98_00285) | ssbB | 60097..60486 (-) | 390 | WP_021165898.1 | single-stranded DNA-binding protein | Machinery gene |
| J3S98_RS00290 (J3S98_00290) | - | 60577..61917 (-) | 1341 | WP_021165897.1 | FAD-dependent oxidoreductase | - |
| J3S98_RS00295 (J3S98_00295) | ytpR | 62079..62705 (-) | 627 | WP_011675461.1 | YtpR family tRNA-binding protein | - |
| J3S98_RS00300 (J3S98_00300) | - | 62811..63128 (-) | 318 | WP_011675460.1 | thioredoxin family protein | - |
| J3S98_RS00305 (J3S98_00305) | - | 63173..63457 (-) | 285 | WP_011675459.1 | hypothetical protein | - |
| J3S98_RS00310 (J3S98_00310) | pepA | 63560..64627 (+) | 1068 | WP_021165896.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14703.77 Da Isoelectric Point: 6.9865
>NTDB_id=547270 J3S98_RS00285 WP_021165898.1 60097..60486(-) (ssbB) [Lactococcus cremoris strain FM-YL11]
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETFVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRESAVNFEELLLEADELPF
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETFVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRESAVNFEELLLEADELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=547270 J3S98_RS00285 WP_021165898.1 60097..60486(-) (ssbB) [Lactococcus cremoris strain FM-YL11]
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTCGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTCGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
96.899 |
100 |
0.969 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
60 |
100 |
0.605 |
| ssbA | Streptococcus mutans UA159 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis SK321 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
55.385 |
100 |
0.558 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
41.964 |
86.822 |
0.364 |