Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   J0X00_RS12140 Genome accession   NZ_CP071708
Coordinates   1281268..1282401 (+) Length   377 a.a.
NCBI ID   WP_136487765.1    Uniprot ID   -
Organism   Vibrio sp. ABG19     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1276268..1287401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0X00_RS12120 (J0X00_12120) rsmB 1277520..1278815 (-) 1296 WP_282478124.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  J0X00_RS12125 (J0X00_12125) fmt 1278885..1279832 (-) 948 WP_282478125.1 methionyl-tRNA formyltransferase -
  J0X00_RS12130 (J0X00_12130) def 1279848..1280360 (-) 513 WP_136487763.1 peptide deformylase -
  J0X00_RS12135 (J0X00_12135) - 1280499..1281281 (+) 783 WP_282478126.1 hypothetical protein -
  J0X00_RS12140 (J0X00_12140) dprA 1281268..1282401 (+) 1134 WP_136487765.1 DNA-processing protein DprA Machinery gene
  J0X00_RS12145 (J0X00_12145) - 1282404..1282880 (+) 477 WP_282478127.1 DUF494 family protein -
  J0X00_RS12150 (J0X00_12150) - 1282921..1283508 (+) 588 WP_136487767.1 type I DNA topoisomerase -
  J0X00_RS12155 (J0X00_12155) - 1283573..1284709 (-) 1137 WP_282478128.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  J0X00_RS12160 (J0X00_12160) purE 1284714..1285199 (-) 486 WP_136487769.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  J0X00_RS12165 (J0X00_12165) - 1285426..1285983 (+) 558 WP_136487770.1 L-threonylcarbamoyladenylate synthase -
  J0X00_RS12170 (J0X00_12170) hemF 1285999..1286913 (+) 915 WP_282478129.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40510.85 Da        Isoelectric Point: 6.2807

>NTDB_id=547148 J0X00_RS12140 WP_136487765.1 1281268..1282401(+) (dprA) [Vibrio sp. ABG19]
MSHHEEWNEEEFQAWLAFAFVPGFGLRAVQRLAARDALSVQLRDIQKRGMGPGLNASQLAYLRSQATKDVEACLYWREQS
SQRAIITARCATYPPLLSEIAAAPPVLFIEGDAGVLLQPQIAIVGSRNASSGGLEIAAQFGAQLAEQGLVVTSGLALGID
GYAHDGALNGGGDSVAVLGCGLEHIYPARHRRLAGRIAEQGALVSEFRPSARARAEHFPRRNRIISGLSLGVLVVEAAEK
SGSLITARYASEQNRDVFVIPGSIHNAHSTGSNQLIRQGACLVQNVGQILDEVANLLDWSLKSQQTAQSELFSHPNQQEQ
LPFPELLANVGEEATPVDILASRTHIPVQDVMTQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=547148 J0X00_RS12140 WP_136487765.1 1281268..1282401(+) (dprA) [Vibrio sp. ABG19]
ATGAGTCACCATGAAGAGTGGAATGAGGAAGAGTTCCAAGCCTGGCTAGCCTTTGCTTTTGTGCCCGGCTTTGGTCTGCG
TGCCGTGCAGCGTTTGGCGGCGCGTGATGCGCTCAGTGTCCAGTTGCGTGATATTCAAAAAAGGGGGATGGGCCCCGGCC
TGAATGCCAGTCAGCTTGCTTATCTGCGCAGTCAGGCCACAAAGGATGTGGAGGCGTGCCTGTACTGGCGTGAGCAGTCA
TCGCAGCGCGCGATTATCACCGCCCGCTGCGCCACGTATCCGCCCTTGCTCAGTGAAATTGCGGCTGCGCCGCCGGTGCT
GTTTATCGAAGGTGATGCCGGTGTGCTGCTGCAACCGCAGATCGCAATTGTCGGCAGCCGTAATGCCAGCAGCGGCGGGC
TGGAGATCGCGGCCCAGTTCGGTGCCCAACTGGCCGAGCAGGGGTTGGTGGTCACCAGTGGCCTGGCGCTCGGTATTGAC
GGCTATGCCCATGACGGCGCATTGAATGGCGGTGGCGACAGCGTGGCCGTGCTCGGCTGCGGTTTAGAGCATATTTATCC
GGCCCGCCATCGTCGCCTGGCCGGGCGAATTGCCGAACAAGGCGCCTTGGTCTCCGAGTTTCGGCCCTCTGCCCGGGCAC
GGGCTGAACACTTCCCGCGTCGCAACCGGATTATCAGCGGCTTGTCGCTCGGGGTGTTGGTGGTGGAAGCGGCGGAAAAA
AGTGGTTCCCTTATCACCGCGCGTTATGCCAGTGAGCAGAACCGCGATGTGTTTGTCATTCCCGGTTCAATTCACAACGC
GCACAGCACCGGCAGTAATCAGTTGATTCGCCAGGGGGCTTGCCTGGTGCAGAATGTCGGGCAGATCCTCGATGAAGTCG
CGAATTTGCTCGATTGGTCACTTAAGTCGCAGCAAACGGCGCAGTCTGAACTTTTTTCTCACCCAAATCAGCAAGAACAA
TTGCCATTTCCCGAGCTGTTAGCTAACGTAGGGGAAGAAGCTACACCAGTTGATATTCTTGCAAGCAGGACCCATATACC
TGTCCAGGATGTCATGACGCAGCTCCTGGAGCTTGAACTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAA
AGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(83-284)

DprA winged helix domain (DprA_WH)

(325-370)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

62.534

98.408

0.615
  dprA Vibrio campbellii strain DS40M4

60.811

98.143

0.597
  dprA Glaesserella parasuis strain SC1401

47.006

88.594

0.416
  dprA Legionella pneumophila strain ERS1305867

43.213

95.756

0.414
  dprA Neisseria meningitidis strain C311

37.25

100

0.395
  dprA Neisseria meningitidis MC58

37.25

100

0.395
  dprA Neisseria gonorrhoeae strain FA1090

36.725

100

0.393
  dprA Neisseria gonorrhoeae MS11

36.476

100

0.39
  dprA Acinetobacter baylyi ADP1

40.751

91.777

0.374
  dprA Haemophilus influenzae Rd KW20

42.042

88.329

0.371