Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   J1N58_RS03675 Genome accession   NZ_CP071697
Coordinates   750516..751175 (+) Length   219 a.a.
NCBI ID   WP_105096891.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 745516..756175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS03660 (J1N58_03660) - 746424..747737 (-) 1314 Protein_675 IS1182 family transposase -
  J1N58_RS03665 (J1N58_03665) - 748107..749552 (-) 1446 WP_099872232.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  J1N58_RS03670 (J1N58_03670) - 749700..750446 (+) 747 WP_014735985.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  J1N58_RS03675 (J1N58_03675) comEA/celA/cilE 750516..751175 (+) 660 WP_105096891.1 helix-hairpin-helix domain-containing protein Machinery gene
  J1N58_RS03680 (J1N58_03680) comEC/celB 751159..753393 (+) 2235 WP_207560531.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23408.04 Da        Isoelectric Point: 4.1610

>NTDB_id=547042 J1N58_RS03675 WP_105096891.1 750516..751175(+) (comEA/celA/cilE) [Streptococcus suis strain 1112S]
MDTIKTYIEMLKEYKWQIALPAVAGLLMATFLIFSQPAKSDQTGLTDFSQTEQTSSSQEQVEEVSTEESEELSQLVIDVK
GAVVKPGLYTLEEGSRVNDAVEAAGGLTSQADPKSVNLAQKLSDEAVVYVASKDEHISVVTSTTASSAMSQKGNESKVNL
NTATEADLQTISGIGAKRAADIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=547042 J1N58_RS03675 WP_105096891.1 750516..751175(+) (comEA/celA/cilE) [Streptococcus suis strain 1112S]
ATGGATACGATTAAAACTTATATAGAAATGCTTAAAGAATACAAGTGGCAAATTGCTCTGCCCGCAGTGGCTGGCTTGCT
TATGGCGACGTTTTTAATCTTCAGCCAACCAGCCAAATCTGACCAGACAGGTCTGACAGATTTTTCACAGACCGAGCAAA
CTTCTAGCAGTCAAGAGCAAGTTGAAGAAGTCAGTACAGAAGAGAGTGAGGAGCTTAGTCAGCTAGTCATTGATGTCAAA
GGAGCGGTAGTCAAACCGGGGCTTTATACCTTAGAAGAAGGGAGTCGTGTCAATGACGCGGTTGAGGCAGCTGGCGGCTT
GACTAGTCAGGCAGACCCTAAGTCTGTCAATCTGGCTCAGAAGCTCAGCGACGAGGCGGTGGTCTATGTGGCAAGTAAAG
ATGAACACATCTCGGTGGTGACCAGCACGACTGCCAGCTCTGCTATGTCCCAAAAAGGAAATGAAAGCAAGGTCAATCTA
AACACAGCGACCGAGGCAGACCTGCAGACCATTTCGGGTATCGGTGCCAAGCGGGCGGCGGACATTATCGCCTATCGTGA
GGCCAACGGTGGTTTCAAATCGGTGGATGACCTCAACAATGTGTCGGGCATCGGCGACAAGACCATGGAAAGCATTCGGC
CTTATGTCACGGTCGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(76-130)

Helix-hairpin-helix motif (HHH_3)

(154-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae Rx1

49.083

99.543

0.489
  comEA/celA/cilE Streptococcus pneumoniae D39

49.083

99.543

0.489
  comEA/celA/cilE Streptococcus pneumoniae R6

49.083

99.543

0.489
  comEA/celA/cilE Streptococcus mitis SK321

47.964

100

0.484
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

49.074

98.63

0.484
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.926

99.087

0.475
  comEA Streptococcus thermophilus LMD-9

59.748

72.603

0.434
  comEA Lactococcus lactis subsp. cremoris KW2

39.171

99.087

0.388
  comEA Bacillus subtilis subsp. subtilis str. 168

40.385

94.977

0.384