Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   J1N58_RS03680 Genome accession   NZ_CP071697
Coordinates   751159..753393 (+) Length   744 a.a.
NCBI ID   WP_207560531.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 746159..758393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS03660 (J1N58_03660) - 746424..747737 (-) 1314 Protein_675 IS1182 family transposase -
  J1N58_RS03665 (J1N58_03665) - 748107..749552 (-) 1446 WP_099872232.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  J1N58_RS03670 (J1N58_03670) - 749700..750446 (+) 747 WP_014735985.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  J1N58_RS03675 (J1N58_03675) comEA/celA/cilE 750516..751175 (+) 660 WP_105096891.1 helix-hairpin-helix domain-containing protein Machinery gene
  J1N58_RS03680 (J1N58_03680) comEC/celB 751159..753393 (+) 2235 WP_207560531.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 83765.60 Da        Isoelectric Point: 6.5628

>NTDB_id=547043 J1N58_RS03680 WP_207560531.1 751159..753393(+) (comEC/celB) [Streptococcus suis strain 1112S]
MSRSIKLPCQPIHLSVLAVAAYFAVHSFSLLTMGLLSLLLLVFGFRQGKVVFLKTLPLLALCGLFFGCQKVQWERAAQSD
PEQVTIVQVIPDTIDINGDSLSFRGRADGQIYQVFYKLASQEEQTYFQELTDLVQLEVEAEVSLPAGRRNLKGFDYQAYL
KTQGIYRTVKISAIKKIVLVQSWNVFDWLSSWRRQALVYIKTNFPAPMSHYMTGLLFGELDSDFDQMSDLYSSLGIIHLF
ALSGMQVGFFIDKFRWMLLRLGLTKETVDKLQIPFSLVYAGLTGFSVSVVRSLVQKILGNMGLRKLDNFAVTVFVCLLIL
PRFLLTAGGVLTFTYAFLLTVFEFEDLGQVKKVAVESLSISLGILPVLMTYFYAFQPLSILLTFVFSFVFDVLLLPGLSV
IFLLSPLVKMTWVNGFFVFMEKIIVWVADLGFRPWILGKPSELVLLLLLVSLFLLYDFHRKKNWLLGLSLVLALLFFITK
HPLENEVTVVDIGQGDSIFLRDMRGRTVLIDVGGRVDFAAKEAWQERSSQANAERTLIPYLHSRGVDRIDSLVLTHTDTD
HVGDVLEVAKQVQIGRIVVSPGSLTVPDFVATLKEINVPVHVVAVGDRLPIFDSYLEVLYPSGTGDGGNNDSIVLYGRLL
ETNFLFTGDLEQGELDLIESYPNLPVDVLKAGHHGSQGSSYPEFLDHIGAKIALVSAGENNRYKHPHQETLDRFDSRNIQ
VYRTDQQGAIRFRGWKEWTVETVR

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=547043 J1N58_RS03680 WP_207560531.1 751159..753393(+) (comEC/celB) [Streptococcus suis strain 1112S]
ATGTCACGGTCGATTAAGCTCCCCTGCCAGCCCATTCACCTGTCAGTCTTGGCGGTGGCGGCCTACTTTGCAGTCCATTC
TTTTTCCCTCTTGACAATGGGCCTGCTGAGTTTGTTGCTCCTTGTCTTTGGGTTTCGGCAAGGCAAGGTAGTTTTCCTCA
AAACGCTGCCGCTTCTAGCCCTGTGCGGTCTGTTTTTCGGATGCCAGAAGGTCCAATGGGAGCGGGCAGCCCAGTCAGAC
CCAGAGCAAGTGACGATTGTGCAGGTCATTCCTGATACCATAGACATCAATGGCGACAGCCTGTCCTTTCGAGGTCGGGC
TGACGGACAAATCTATCAGGTTTTCTACAAATTAGCCAGTCAGGAGGAGCAGACTTATTTTCAAGAGCTAACAGATTTGG
TCCAGCTTGAAGTGGAAGCAGAGGTCAGCCTGCCAGCTGGTCGGCGGAATCTCAAGGGCTTTGACTACCAAGCCTATCTG
AAAACGCAGGGAATTTATCGGACAGTTAAGATTTCTGCGATAAAGAAGATTGTCCTTGTCCAGTCTTGGAATGTTTTTGA
CTGGCTATCTAGCTGGCGGAGACAGGCCTTGGTCTATATCAAAACCAATTTTCCAGCTCCTATGAGTCACTACATGACAG
GGCTTTTGTTTGGGGAGCTGGATAGTGATTTCGACCAGATGAGCGACCTCTATTCTAGTCTGGGCATCATTCATCTCTTT
GCCCTGTCTGGCATGCAGGTGGGCTTTTTCATCGACAAGTTTCGCTGGATGTTGTTGCGTTTGGGCTTGACCAAGGAAAC
GGTAGATAAGCTACAAATTCCCTTTTCTCTTGTCTATGCTGGTTTGACAGGTTTTTCCGTGTCGGTGGTGCGGTCCTTGG
TTCAGAAAATATTGGGCAATATGGGCTTGCGGAAGTTGGATAACTTTGCGGTGACGGTCTTTGTCTGTCTGTTGATTCTG
CCCCGATTTTTGCTGACAGCTGGCGGTGTCCTGACCTTTACCTATGCTTTTTTGCTGACGGTTTTTGAATTTGAGGACTT
GGGGCAGGTCAAAAAGGTTGCGGTGGAGAGCCTCAGTATTTCACTGGGAATTTTGCCGGTACTTATGACCTATTTCTATG
CCTTTCAGCCTCTGTCTATCCTTTTGACCTTTGTCTTTTCCTTTGTCTTTGATGTCCTGCTCTTGCCAGGCTTGTCGGTC
ATTTTTCTTCTATCGCCCTTGGTCAAGATGACTTGGGTCAACGGATTTTTCGTTTTTATGGAAAAAATCATTGTCTGGGT
GGCTGATTTGGGTTTTCGGCCTTGGATACTGGGCAAGCCGTCTGAGCTGGTCCTCTTGCTTTTGCTGGTCAGCCTCTTCT
TACTTTATGATTTCCACAGGAAGAAAAACTGGCTCCTAGGACTGAGCCTGGTCCTTGCTCTGCTATTTTTCATCACCAAA
CACCCGCTGGAAAACGAGGTGACGGTAGTGGACATCGGGCAGGGGGATAGCATCTTTTTGCGGGATATGCGGGGGCGGAC
GGTTCTGATTGATGTGGGCGGTCGGGTCGATTTCGCGGCCAAGGAAGCGTGGCAGGAGCGGTCTTCGCAGGCAAATGCAG
AGCGGACCTTGATTCCCTATCTGCATAGTCGGGGTGTGGATAGGATTGATAGCTTGGTTCTGACCCATACCGATACGGAC
CATGTGGGCGATGTGCTGGAAGTGGCGAAGCAGGTGCAAATTGGTCGGATTGTCGTGTCGCCAGGAAGTCTGACGGTGCC
TGACTTTGTAGCGACTTTGAAAGAAATCAATGTCCCTGTTCATGTGGTGGCGGTAGGTGACCGCTTGCCGATTTTTGACT
CCTATCTGGAGGTTCTCTATCCAAGTGGAACGGGCGACGGTGGCAATAATGACTCTATTGTCCTTTACGGTCGTTTGCTG
GAAACCAATTTTCTCTTTACAGGGGACTTGGAGCAGGGGGAGTTGGACTTGATAGAATCCTATCCCAACTTGCCTGTCGA
TGTCCTCAAAGCTGGTCACCACGGATCCCAAGGGTCTTCCTATCCCGAATTTCTAGACCATATCGGAGCCAAGATTGCCC
TGGTATCAGCAGGAGAAAACAACCGCTATAAGCATCCTCACCAAGAAACCTTGGACCGCTTTGACAGTCGAAATATCCAA
GTCTATCGTACAGACCAGCAAGGAGCCATTCGCTTCCGAGGTTGGAAGGAGTGGACGGTGGAGACGGTGAGGTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(28-176)

Metallo-beta-lactamase superfamily (Lactamase_B)

(493-698)

Competence protein (Competence)

(215-460)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis SK321

55.034

100

0.551
  comEC/celB Streptococcus mitis NCTC 12261

53.908

99.731

0.538
  comEC/celB Streptococcus pneumoniae TIGR4

52.624

99.866

0.526
  comEC/celB Streptococcus pneumoniae Rx1

52.49

99.866

0.524
  comEC/celB Streptococcus pneumoniae D39

52.49

99.866

0.524
  comEC/celB Streptococcus pneumoniae R6

52.49

99.866

0.524
  comEC Lactococcus lactis subsp. cremoris KW2

47.727

100

0.48