Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   J1N58_RS00790 Genome accession   NZ_CP071697
Coordinates   137555..138592 (+) Length   345 a.a.
NCBI ID   WP_050571398.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 132555..143592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS00775 (J1N58_00775) - 135261..135638 (+) 378 WP_029175711.1 DUF1033 family protein -
  J1N58_RS00780 (J1N58_00780) - 135657..136607 (-) 951 WP_029175710.1 S66 peptidase family protein -
  J1N58_RS00785 (J1N58_00785) comYA 136693..137643 (+) 951 WP_024376298.1 competence type IV pilus ATPase ComGA Machinery gene
  J1N58_RS00790 (J1N58_00790) comYB 137555..138592 (+) 1038 WP_050571398.1 competence type IV pilus assembly protein ComGB Machinery gene
  J1N58_RS00795 (J1N58_00795) comYC 138594..138875 (+) 282 WP_024376296.1 competence type IV pilus major pilin ComGC Machinery gene
  J1N58_RS00800 (J1N58_00800) comGD 138856..139263 (+) 408 WP_024376295.1 competence type IV pilus minor pilin ComGD -
  J1N58_RS00805 (J1N58_00805) comYE 139235..139528 (+) 294 WP_024376294.1 competence type IV pilus minor pilin ComGE Machinery gene
  J1N58_RS00810 (J1N58_00810) comGF/cglF 139515..139949 (+) 435 WP_024376293.1 competence type IV pilus minor pilin ComGF Machinery gene
  J1N58_RS00815 (J1N58_00815) comGG 139927..140442 (+) 516 WP_207560409.1 competence type IV pilus minor pilin ComGG -
  J1N58_RS00820 (J1N58_00820) comYH 140499..141452 (+) 954 WP_024376291.1 class I SAM-dependent methyltransferase Machinery gene
  J1N58_RS00825 (J1N58_00825) - 141503..142690 (+) 1188 WP_207560410.1 acetate kinase -
  J1N58_RS00830 (J1N58_00830) - 143005..143556 (+) 552 WP_207560411.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38979.94 Da        Isoelectric Point: 9.6074

>NTDB_id=547026 J1N58_RS00790 WP_050571398.1 137555..138592(+) (comYB) [Streptococcus suis strain 1112S]
MRKLIAFLQQDISVFGRQKQKKLPLARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPVILLGFLVLIMLGLKNYLLPQLEEGNAATM
LINHLPTIFLSLSGLSLVVVLAGLVWFRKTNKIKVFSRLAALPFFGKLLQTYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGQDLEQSLSNGQSFHEHIKTYAFFKRELSLIVEYGQVKSKLGGELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=547026 J1N58_RS00790 WP_050571398.1 137555..138592(+) (comYB) [Streptococcus suis strain 1112S]
ATGCGCAAATTGATCGCCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGCGCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTCTTTGCCAGTGGTTTTCATCTGGGGGAGATTGTTGATTTCCTCAAAC
GTAGTCAACTTTTGGCAGATCCCTATACCCAGGTCTTGTCGGATGGTCTTCTTGCAGGAAAGCCATTTTCAAGCCTCTTA
GCGGATTTGCGGTTTTCAGATGCGGTGGTCACACAGGTGGCTTTGGCAGAAGTTCATGGCAATACCAGCCTGAGTTTGAG
CCATATCCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAAAAGCTGATTGAGGTGGCGACCTATCCAGTTATCTTGC
TAGGCTTTCTTGTTTTGATTATGCTGGGCTTGAAAAACTATCTTTTGCCCCAGTTGGAGGAAGGTAATGCAGCGACTATG
CTGATCAACCATCTGCCGACTATCTTTTTATCCCTATCTGGTCTGAGTTTGGTGGTGGTCTTAGCTGGTCTGGTTTGGTT
TCGCAAAACCAACAAAATCAAGGTCTTTTCCCGCTTAGCTGCTCTGCCATTTTTCGGAAAACTCCTCCAAACCTATCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGCTTGGACCTGCCGCAGATTGTGGGCTTGATGCAGGAG
CAGCAATCGCAGCTCTTTCGGGAGATTGGTCAGGACCTGGAGCAGTCGCTTTCCAATGGTCAGAGCTTTCACGAACACAT
TAAGACCTACGCCTTTTTTAAGCGGGAGTTGAGTTTGATTGTCGAGTATGGTCAGGTCAAGTCCAAGTTGGGTGGCGAGT
TGACAGTTTATGCAGCCGAGTGTTGGGAGGATTTTTTCTCTCGGGTCAATAGAGCCATGCAGCTGATTCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

63.743

99.13

0.632
  comYB Streptococcus mutans UA140

59.475

99.42

0.591
  comYB Streptococcus mutans UA159

59.475

99.42

0.591
  comGB/cglB Streptococcus mitis NCTC 12261

60.597

97.101

0.588
  comGB/cglB Streptococcus mitis SK321

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae Rx1

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae D39

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae R6

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae TIGR4

60

97.101

0.583
  comGB Lactococcus lactis subsp. cremoris KW2

50.445

97.681

0.493