Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   J1N58_RS00805 Genome accession   NZ_CP071697
Coordinates   139235..139528 (+) Length   97 a.a.
NCBI ID   WP_024376294.1    Uniprot ID   -
Organism   Streptococcus suis strain 1112S     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 134235..144528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J1N58_RS00775 (J1N58_00775) - 135261..135638 (+) 378 WP_029175711.1 DUF1033 family protein -
  J1N58_RS00780 (J1N58_00780) - 135657..136607 (-) 951 WP_029175710.1 S66 peptidase family protein -
  J1N58_RS00785 (J1N58_00785) comYA 136693..137643 (+) 951 WP_024376298.1 competence type IV pilus ATPase ComGA Machinery gene
  J1N58_RS00790 (J1N58_00790) comYB 137555..138592 (+) 1038 WP_050571398.1 competence type IV pilus assembly protein ComGB Machinery gene
  J1N58_RS00795 (J1N58_00795) comYC 138594..138875 (+) 282 WP_024376296.1 competence type IV pilus major pilin ComGC Machinery gene
  J1N58_RS00800 (J1N58_00800) comGD 138856..139263 (+) 408 WP_024376295.1 competence type IV pilus minor pilin ComGD -
  J1N58_RS00805 (J1N58_00805) comYE 139235..139528 (+) 294 WP_024376294.1 competence type IV pilus minor pilin ComGE Machinery gene
  J1N58_RS00810 (J1N58_00810) comGF/cglF 139515..139949 (+) 435 WP_024376293.1 competence type IV pilus minor pilin ComGF Machinery gene
  J1N58_RS00815 (J1N58_00815) comGG 139927..140442 (+) 516 WP_207560409.1 competence type IV pilus minor pilin ComGG -
  J1N58_RS00820 (J1N58_00820) comYH 140499..141452 (+) 954 WP_024376291.1 class I SAM-dependent methyltransferase Machinery gene
  J1N58_RS00825 (J1N58_00825) - 141503..142690 (+) 1188 WP_207560410.1 acetate kinase -
  J1N58_RS00830 (J1N58_00830) - 143005..143556 (+) 552 WP_207560411.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10728.56 Da        Isoelectric Point: 8.0150

>NTDB_id=547028 J1N58_RS00805 WP_024376294.1 139235..139528(+) (comYE) [Streptococcus suis strain 1112S]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLNLAQMAVQTGQDNLALNGVTVQVQRTAD
EIIVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=547028 J1N58_RS00805 WP_024376294.1 139235..139528(+) (comYE) [Streptococcus suis strain 1112S]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATCTTGCTAGAAAGTCTGGTTGCCCTTGCGACCCTAGTGACCAT
TTGTAGCTTGATTTTGTCAGCGGTGGATGCTGGTCGCAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAATC
TAGCACAGATGGCTGTTCAGACCGGGCAAGATAACCTAGCCTTAAACGGTGTTACAGTTCAGGTTCAACGAACTGCGGAT
GAGATTATTGTTTTCCACGAGGGAAAGGAGGTTCTATCAGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

55.67

100

0.557
  comYE Streptococcus mutans UA159

55.67

100

0.557
  comGE/cglE Streptococcus pneumoniae Rx1

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae D39

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae R6

41.304

94.845

0.392
  comGE/cglE Streptococcus pneumoniae TIGR4

41.304

94.845

0.392
  comGE/cglE Streptococcus mitis SK321

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis NCTC 12261

40.217

94.845

0.381