Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   LOZ99_RS18620 Genome accession   NZ_CP087344
Coordinates   3801691..3802164 (-) Length   157 a.a.
NCBI ID   WP_072292236.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DB007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3796691..3807164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOZ99_RS18600 - 3798279..3798662 (+) 384 WP_000090000.1 RidA family protein -
  LOZ99_RS18605 - 3798872..3799066 (+) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  LOZ99_RS18610 bfr 3799311..3799775 (+) 465 WP_000678123.1 bacterioferritin -
  LOZ99_RS18615 - 3799818..3801446 (-) 1629 WP_001195775.1 PglL family O-oligosaccharyltransferase -
  LOZ99_RS18620 pilA 3801691..3802164 (-) 474 WP_072292236.1 pilin Machinery gene
  LOZ99_RS18625 - 3802510..3803070 (-) 561 WP_000258946.1 TPM domain-containing protein -
  LOZ99_RS18630 - 3803064..3804146 (-) 1083 WP_001246387.1 YgcG family protein -
  LOZ99_RS18635 - 3804168..3804758 (-) 591 WP_000846931.1 LemA family protein -
  LOZ99_RS18640 - 3804889..3805776 (-) 888 WP_001017320.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 15793.83 Da        Isoelectric Point: 4.7227

>NTDB_id=545594 LOZ99_RS18620 WP_072292236.1 3801691..3802164(-) (pilA) [Acinetobacter baumannii strain DB007]
MNAQKGFTLIELMIVVAIIGILAAIAIPQYQTYIAKSQVSRAVSESGSLKTVIEDCLNNGKTTVGEAAGECAIGATGSNI
LDGAAQSGETLAAGTGVPKVTLANTGAATIVATFGNSASTALKSTPTTVTWTRTTDGTWTCESTAAEKYNSSACPAA

Nucleotide


Download         Length: 474 bp        

>NTDB_id=545594 LOZ99_RS18620 WP_072292236.1 3801691..3802164(-) (pilA) [Acinetobacter baumannii strain DB007]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTCATGATCGTAGTTGCCATTATTGGTATTTTGGCTGCAATTGCGAT
TCCGCAATATCAAACTTATATTGCCAAATCGCAAGTATCACGTGCGGTTAGTGAATCAGGTTCCTTAAAAACTGTAATTG
AAGACTGTTTAAATAATGGTAAAACTACAGTTGGTGAAGCTGCTGGTGAATGTGCTATTGGGGCAACGGGTTCAAATATT
TTAGATGGGGCTGCACAAAGTGGTGAAACTTTAGCTGCTGGAACTGGGGTTCCAAAAGTTACATTAGCAAATACAGGCGC
TGCGACAATTGTTGCAACTTTTGGTAATTCTGCTTCTACTGCATTAAAATCTACACCAACTACAGTAACTTGGACTCGTA
CAACAGATGGCACTTGGACATGTGAAAGTACTGCTGCCGAAAAATATAATAGTTCTGCTTGCCCTGCAGCATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

44.099

100

0.452
  pilA Pseudomonas aeruginosa PAK

43.226

98.726

0.427
  comP Acinetobacter baylyi ADP1

39.873

100

0.401
  pilA/pilAI Pseudomonas stutzeri DSM 10701

41.176

97.452

0.401
  pilA/pilA1 Eikenella corrodens VA1

38.562

97.452

0.376
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

36.943

100

0.369
  pilA Vibrio cholerae strain A1552

36.943

100

0.369
  pilA Vibrio cholerae C6706

36.943

100

0.369
  pilA2 Legionella pneumophila strain ERS1305867

37.179

99.363

0.369