Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   J0J35_RS09920 Genome accession   NZ_CP071301
Coordinates   2010613..2011002 (+) Length   129 a.a.
NCBI ID   WP_019293857.1    Uniprot ID   -
Organism   Lactococcus sp. LG606     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2005613..2016002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J35_RS09885 (J0J35_09885) - 2006332..2006841 (+) 510 WP_206916826.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  J0J35_RS09890 (J0J35_09890) - 2006831..2007235 (+) 405 Protein_1916 methylated-DNA--[protein]-cysteine S-methyltransferase -
  J0J35_RS09895 (J0J35_09895) - 2007252..2007935 (-) 684 WP_019291360.1 phosphatase PAP2 family protein -
  J0J35_RS09900 (J0J35_09900) pepA 2008046..2009113 (-) 1068 WP_206916830.1 glutamyl aminopeptidase -
  J0J35_RS09905 (J0J35_09905) - 2009314..2009601 (+) 288 WP_029343529.1 hypothetical protein -
  J0J35_RS09910 (J0J35_09910) - 2009598..2009918 (+) 321 WP_206916832.1 thioredoxin family protein -
  J0J35_RS09915 (J0J35_09915) ytpR 2009920..2010543 (+) 624 WP_206916834.1 YtpR family tRNA-binding protein -
  J0J35_RS09920 (J0J35_09920) ssbB 2010613..2011002 (+) 390 WP_019293857.1 single-stranded DNA-binding protein Machinery gene
  J0J35_RS09925 (J0J35_09925) - 2011059..2011589 (+) 531 WP_019293858.1 ClbS/DfsB family four-helix bundle protein -
  J0J35_RS09930 (J0J35_09930) groES 2011707..2011988 (+) 282 WP_019291353.1 co-chaperone GroES -
  J0J35_RS09935 (J0J35_09935) groL 2012018..2013643 (+) 1626 WP_206916835.1 chaperonin GroEL -
  J0J35_RS09940 (J0J35_09940) - 2013693..2014505 (-) 813 WP_019293859.1 MBL fold metallo-hydrolase -
  J0J35_RS09945 (J0J35_09945) - 2014502..2015920 (-) 1419 WP_206916837.1 ATP-binding protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14706.87 Da        Isoelectric Point: 9.6892

>NTDB_id=544822 J0J35_RS09920 WP_019293857.1 2010613..2011002(+) (ssbB) [Lactococcus sp. LG606]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKNTDFVALVFWEKQAEHCTSYAKKGALLAVEGEIRTRN
YVDKQEQKRYVTEVLVKTFDLLESRATVAMRQDSIENSALNLKEDELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=544822 J0J35_RS09920 WP_019293857.1 2010613..2011002(+) (ssbB) [Lactococcus sp. LG606]
ATGAATAAAACGTTACTTGTTGGCCGACTCGTTGCAGATCCAGAACTCACTAAAACATCTAATGGGAAAAGCCTATTGAG
AATAAATCTTGCTGTCAAACGACGCTATAAAAATGCTTCAGGTGAAAAAAATACAGACTTTGTCGCTTTGGTCTTTTGGG
AGAAACAGGCGGAACACTGTACATCCTATGCTAAAAAAGGCGCCCTACTTGCTGTGGAAGGGGAGATACGAACCAGAAAT
TATGTGGACAAGCAGGAACAAAAACGCTATGTGACAGAAGTGTTGGTAAAAACTTTTGACCTTTTGGAAAGTCGCGCGAC
AGTTGCCATGCGACAAGATTCTATAGAAAATAGTGCTCTTAATTTAAAAGAAGATGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

57.364

100

0.574
  ssbB/cilA Streptococcus pneumoniae TIGR4

52.308

100

0.527
  ssbB/cilA Streptococcus mitis NCTC 12261

52.308

100

0.527
  ssbB/cilA Streptococcus pneumoniae R6

51.538

100

0.519
  ssbA Streptococcus mutans UA159

51.538

100

0.519
  ssbB/cilA Streptococcus mitis SK321

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae D39

51.538

100

0.519
  ssbB Streptococcus sobrinus strain NIDR 6715-7

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae Rx1

51.538

100

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

45.536

86.822

0.395