Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   JZX84_RS01535 Genome accession   NZ_CP071300
Coordinates   264125..264514 (+) Length   129 a.a.
NCBI ID   WP_019291355.1    Uniprot ID   A0A252CCZ8
Organism   Lactococcus sp. LG592     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 259125..269514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JZX84_RS01500 (JZX84_01500) - 259843..260352 (+) 510 WP_206888202.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  JZX84_RS01505 (JZX84_01505) - 260342..260746 (+) 405 WP_165720037.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  JZX84_RS01510 (JZX84_01510) - 260763..261446 (-) 684 WP_206888205.1 phosphatase PAP2 family protein -
  JZX84_RS01515 (JZX84_01515) pepA 261558..262625 (-) 1068 WP_206888208.1 glutamyl aminopeptidase -
  JZX84_RS01520 (JZX84_01520) - 262826..263113 (+) 288 WP_206888211.1 hypothetical protein -
  JZX84_RS01525 (JZX84_01525) - 263110..263430 (+) 321 WP_165716501.1 thioredoxin family protein -
  JZX84_RS01530 (JZX84_01530) ytpR 263432..264055 (+) 624 WP_206888214.1 YtpR family tRNA-binding protein -
  JZX84_RS01535 (JZX84_01535) ssbB 264125..264514 (+) 390 WP_019291355.1 single-stranded DNA-binding protein Machinery gene
  JZX84_RS01540 (JZX84_01540) - 264571..265101 (+) 531 WP_206888217.1 ClbS/DfsB family four-helix bundle protein -
  JZX84_RS01545 (JZX84_01545) groES 265219..265500 (+) 282 WP_206888220.1 co-chaperone GroES -
  JZX84_RS01550 (JZX84_01550) groL 265529..267154 (+) 1626 WP_003133890.1 chaperonin GroEL -
  JZX84_RS01555 (JZX84_01555) - 267204..268016 (-) 813 WP_165716504.1 MBL fold metallo-hydrolase -
  JZX84_RS01560 (JZX84_01560) - 268013..269431 (-) 1419 WP_206888223.1 ATP-binding protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14707.85 Da        Isoelectric Point: 9.3830

>NTDB_id=544750 JZX84_RS01535 WP_019291355.1 264125..264514(+) (ssbB) [Lactococcus sp. LG592]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFVALVFWEKQAEHCTSYAKKGALLAVEGEIRTRN
YVDKQEQKRYVTEVLVKTFDLLESRATVAMRQDSIENSALNLKEDELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=544750 JZX84_RS01535 WP_019291355.1 264125..264514(+) (ssbB) [Lactococcus sp. LG592]
ATGAATAAAACGTTACTTGTTGGCCGACTCGTTGCAGATCCAGAACTCACTAAAACATCTAATGGGAAAAGCCTATTGAG
AATAAATCTTGCTGTCAAACGACGCTATAAAAATGCTTCAGGTGAAAAAGATACAGACTTTGTCGCTTTGGTCTTTTGGG
AGAAACAGGCGGAACACTGTACATCCTATGCTAAAAAAGGTGCCCTACTTGCTGTAGAAGGGGAGATACGAACCAGGAAT
TATGTGGACAAGCAGGAACAAAAACGCTATGTGACAGAAGTGTTGGTGAAAACTTTTGACCTTTTGGAAAGTCGCGCGAC
AGTTGCCATGCGACAAGATTCTATAGAAAATAGTGCTCTTAATTTAAAAGAAGACGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A252CCZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

57.364

100

0.574
  ssbB/cilA Streptococcus pneumoniae TIGR4

52.308

100

0.527
  ssbB/cilA Streptococcus mitis NCTC 12261

52.308

100

0.527
  ssbB/cilA Streptococcus pneumoniae R6

51.538

100

0.519
  ssbA Streptococcus mutans UA159

51.538

100

0.519
  ssbB/cilA Streptococcus mitis SK321

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae D39

51.538

100

0.519
  ssbB Streptococcus sobrinus strain NIDR 6715-7

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae Rx1

51.538

100

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

45.536

86.822

0.395