Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   J0J34_RS01350 Genome accession   NZ_CP071290
Coordinates   271125..271514 (+) Length   129 a.a.
NCBI ID   WP_206886406.1    Uniprot ID   -
Organism   Lactococcus garvieae strain LG791     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 271125..277967 271125..271514 within 0


Gene organization within MGE regions


Location: 271125..277967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J0J34_RS01350 (J0J34_01350) ssbB 271125..271514 (+) 390 WP_206886406.1 single-stranded DNA-binding protein Machinery gene
  J0J34_RS01355 (J0J34_01355) - 271572..272102 (+) 531 WP_014024246.1 ClbS/DfsB family four-helix bundle protein -
  J0J34_RS01360 (J0J34_01360) groES 272219..272500 (+) 282 WP_003133888.1 co-chaperone GroES -
  J0J34_RS01365 (J0J34_01365) groL 272529..274154 (+) 1626 WP_003133890.1 chaperonin GroEL -
  J0J34_RS01370 (J0J34_01370) - 274206..275018 (-) 813 WP_003133892.1 MBL fold metallo-hydrolase -
  J0J34_RS01375 (J0J34_01375) - 275015..276433 (-) 1419 WP_014024247.1 ATP-binding protein -
  J0J34_RS01380 (J0J34_01380) yycF 276426..277127 (-) 702 WP_003133894.1 response regulator YycF -
  J0J34_RS01385 (J0J34_01385) tmk 277338..277967 (+) 630 WP_014024248.1 dTMP kinase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14729.92 Da        Isoelectric Point: 9.6892

>NTDB_id=544616 J0J34_RS01350 WP_206886406.1 271125..271514(+) (ssbB) [Lactococcus garvieae strain LG791]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFFTLVFWEKQAEHCMSYAKKGALLAVEGEIRSRS
YVNKNEQKRYVTEVLVKAFDLLESRATVAMRQDSIENSALNLKEDELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=544616 J0J34_RS01350 WP_206886406.1 271125..271514(+) (ssbB) [Lactococcus garvieae strain LG791]
ATGAATAAAACGTTATTGGTGGGTCGACTCGTTGCGGATCCAGAACTTACTAAAACATCCAATGGGAAAAGCCTATTGAG
GATAAATCTCGCTGTCAAGCGACGTTATAAAAATGCTTCAGGTGAAAAAGACACAGACTTTTTTACTTTGGTCTTTTGGG
AAAAACAGGCGGAACACTGTATGTCTTATGCTAAAAAAGGAGCCTTGCTTGCTGTGGAAGGTGAGATACGAAGCAGGAGT
TATGTGAACAAGAATGAACAAAAACGCTATGTGACAGAAGTACTCGTAAAAGCGTTTGACCTTTTGGAAAGTCGCGCAAC
TGTTGCCATGCGACAAGATTCTATAGAAAATAGTGCGCTTAATTTAAAAGAAGACGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

55.814

100

0.558
  ssbB/cilA Streptococcus mitis NCTC 12261

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae R6

50.769

100

0.512
  ssbB/cilA Streptococcus pneumoniae Rx1

50.769

100

0.512
  ssbB/cilA Streptococcus pneumoniae D39

50.769

100

0.512
  ssbB/cilA Streptococcus mitis SK321

50.769

100

0.512
  ssbA Streptococcus mutans UA159

50

100

0.504
  ssbB Streptococcus sobrinus strain NIDR 6715-7

50

100

0.504
  ssb Latilactobacillus sakei subsp. sakei 23K

43.75

86.822

0.38