Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JYG36_RS04895 Genome accession   NZ_CP071007
Coordinates   1024503..1025711 (-) Length   402 a.a.
NCBI ID   WP_213603241.1    Uniprot ID   -
Organism   Pseudomonas sp. SORT22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1019503..1030711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYG36_RS04860 (JYG36_04860) - 1020517..1020690 (-) 174 WP_045200819.1 DUF3094 family protein -
  JYG36_RS04865 (JYG36_04865) - 1020859..1021488 (-) 630 WP_010220617.1 DUF1780 domain-containing protein -
  JYG36_RS04870 (JYG36_04870) - 1021610..1022071 (+) 462 WP_213603237.1 hypothetical protein -
  JYG36_RS04875 (JYG36_04875) - 1022117..1022806 (+) 690 WP_045200823.1 energy-coupling factor ABC transporter permease -
  JYG36_RS04880 (JYG36_04880) yacG 1022811..1023011 (-) 201 WP_045200825.1 DNA gyrase inhibitor YacG -
  JYG36_RS04885 (JYG36_04885) coaE 1023008..1023631 (-) 624 WP_045200827.1 dephospho-CoA kinase -
  JYG36_RS04890 (JYG36_04890) pilD 1023631..1024500 (-) 870 WP_213603239.1 A24 family peptidase Machinery gene
  JYG36_RS04895 (JYG36_04895) pilC 1024503..1025711 (-) 1209 WP_213603241.1 type II secretion system F family protein Machinery gene
  JYG36_RS04900 (JYG36_04900) - 1025929..1026339 (+) 411 WP_093379440.1 pilin -
  JYG36_RS04910 (JYG36_04910) - 1026647..1027942 (+) 1296 WP_213603243.1 integrase arm-type DNA-binding domain-containing protein -
  JYG36_RS04915 (JYG36_04915) - 1028241..1029194 (+) 954 WP_213603245.1 hypothetical protein -
  JYG36_RS04920 (JYG36_04920) - 1029247..1029510 (+) 264 WP_033701417.1 AlpA family phage regulatory protein -
  JYG36_RS04925 (JYG36_04925) - 1029507..1030100 (+) 594 WP_213603247.1 hypothetical protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43102.60 Da        Isoelectric Point: 10.4634

>NTDB_id=542168 JYG36_RS04895 WP_213603241.1 1024503..1025711(-) (pilC) [Pseudomonas sp. SORT22]
MTESNRMYSWQGTNAQGALISGQSAARSAALIRAQLRQRGIRPGRIASVRPPLWQWRRPLDGKALSQFSRQLATLVKAGV
ALLQALDVVAQSSTNPALASLLGAIKADIAAGSSLATALRRHPQYFDRLYCNLVDAGEQSGSLETVLAQVAALQEQRQAL
RMRLKKAMTYPLLVLLVGFGVSALLLLEVVPRFQSLFGGFGAELPAFTQQVINLSQWLGAHLGWLLITFGGACSALAWGY
RHKPGVRLWLVRVALRLPVLGSLLRHAALARFARTLSTSFAAGVPLVEALGPVAGACGNPLYEQAVHKVRDDLASGLALN
VALRTSGLFPALVVQMCAIGETAGTLDDMLARIASHYEQAIDHLLDTLTAMLEPLIVLILGLLVGSLVIAMYLPIFQLGN
VI

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=542168 JYG36_RS04895 WP_213603241.1 1024503..1025711(-) (pilC) [Pseudomonas sp. SORT22]
ATGACCGAAAGCAACCGGATGTACAGCTGGCAAGGCACTAACGCCCAGGGTGCCTTGATCAGCGGCCAGAGTGCGGCGCG
CAGCGCGGCGTTGATCAGGGCGCAGTTGCGCCAGCGCGGGATTCGCCCGGGGCGTATCGCCAGTGTGCGCCCGCCGTTGT
GGCAATGGCGGCGGCCACTGGATGGCAAGGCGCTGAGCCAGTTCAGCCGCCAGCTGGCCACCCTGGTCAAGGCCGGGGTG
GCGCTGTTGCAGGCGTTGGATGTAGTGGCCCAGAGCAGCACTAACCCGGCGCTGGCCAGCCTGCTGGGGGCGATCAAGGC
CGATATCGCCGCCGGCAGCAGCCTGGCCACTGCCCTGCGCCGCCACCCGCAGTACTTCGATCGGCTGTACTGCAACCTGG
TGGACGCCGGTGAGCAGTCCGGCAGCCTGGAGACGGTGCTGGCCCAGGTGGCGGCGCTGCAGGAGCAACGCCAGGCCCTG
CGCATGCGGCTGAAAAAGGCCATGACCTATCCTCTGCTGGTGTTGCTGGTGGGCTTTGGGGTGTCGGCGTTGTTATTGCT
GGAGGTGGTGCCGCGCTTTCAGTCGTTGTTCGGCGGTTTTGGTGCCGAGCTGCCGGCGTTTACTCAACAGGTGATCAATT
TGTCGCAGTGGTTGGGCGCGCACCTTGGGTGGCTGTTGATAACGTTTGGCGGCGCTTGTAGTGCGCTGGCTTGGGGTTAT
CGGCACAAGCCTGGGGTGCGTTTGTGGCTGGTGCGCGTGGCGCTGCGCTTGCCGGTGCTTGGCAGCCTGCTCCGGCATGC
CGCCCTCGCCCGCTTTGCCCGCACCCTGTCGACCTCGTTTGCCGCCGGGGTGCCGCTGGTGGAGGCGCTGGGGCCGGTTG
CCGGGGCCTGCGGCAATCCGTTGTATGAGCAGGCGGTGCACAAGGTGCGCGACGACCTTGCCAGTGGTCTGGCCTTGAAC
GTGGCGTTGCGCACCAGCGGGCTGTTCCCGGCGCTGGTGGTGCAGATGTGCGCCATTGGCGAGACAGCCGGCACGCTGGA
CGATATGCTCGCCAGGATCGCCAGCCATTATGAACAGGCCATCGACCACCTGCTCGACACCCTCACGGCCATGCTCGAGC
CGTTGATCGTGCTGATCCTGGGGTTGCTGGTGGGCAGCCTGGTGATCGCCATGTACCTGCCAATCTTCCAGCTGGGCAAT
GTGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

48.622

99.254

0.483
  pilC Acinetobacter baylyi ADP1

45.137

99.751

0.45
  pilC Legionella pneumophila strain ERS1305867

45.226

99.005

0.448
  pilC Acinetobacter baumannii D1279779

44.332

98.756

0.438
  pilC Vibrio cholerae strain A1552

39.95

99.005

0.396
  pilG Neisseria meningitidis 44/76-A

39.303

100

0.393
  pilG Neisseria gonorrhoeae MS11

39.055

100

0.391
  pilC Vibrio campbellii strain DS40M4

38.519

100

0.388
  pilC Thermus thermophilus HB27

37.406

99.751

0.373