Detailed information NTG0542167

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JYG36_RS04890
• Genome accession: NZ_CP071007
• Coordinates: 1023631..1024500 (-)
• Length: 289 a.a.
• NCBI ID: WP_213603239.1
• Uniprot ID: -
• Organism: Pseudomonas sp. SORT22
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1018631..1029500

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JYG36_RS04855 (JYG36_04855)	-	1019137..1020432 (-)	1296	WP_045200816.1	NAD(P)/FAD-dependent oxidoreductase	-
JYG36_RS04860 (JYG36_04860)	-	1020517..1020690 (-)	174	WP_045200819.1	DUF3094 family protein	-
JYG36_RS04865 (JYG36_04865)	-	1020859..1021488 (-)	630	WP_010220617.1	DUF1780 domain-containing protein	-
JYG36_RS04870 (JYG36_04870)	-	1021610..1022071 (+)	462	WP_213603237.1	hypothetical protein	-
JYG36_RS04875 (JYG36_04875)	-	1022117..1022806 (+)	690	WP_045200823.1	energy-coupling factor ABC transporter permease	-
JYG36_RS04880 (JYG36_04880)	yacG	1022811..1023011 (-)	201	WP_045200825.1	DNA gyrase inhibitor YacG	-
JYG36_RS04885 (JYG36_04885)	coaE	1023008..1023631 (-)	624	WP_045200827.1	dephospho-CoA kinase	-
JYG36_RS04890 (JYG36_04890)	pilD	1023631..1024500 (-)	870	WP_213603239.1	A24 family peptidase	Machinery gene
JYG36_RS04895 (JYG36_04895)	pilC	1024503..1025711 (-)	1209	WP_213603241.1	type II secretion system F family protein	Machinery gene
JYG36_RS04900 (JYG36_04900)	-	1025929..1026339 (+)	411	WP_093379440.1	pilin	-
JYG36_RS04910 (JYG36_04910)	-	1026647..1027942 (+)	1296	WP_213603243.1	integrase arm-type DNA-binding domain-containing protein	-
JYG36_RS04915 (JYG36_04915)	-	1028241..1029194 (+)	954	WP_213603245.1	hypothetical protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31933.15 Da
• Isoelectric Point: 8.0488

>NTDB_id=542167 JYG36_RS04890 WP_213603239.1 1023631..1024500(-) (pilD) [Pseudomonas sp. SORT22]
MNLLNTLASQPLMYLSFALLLGLIVGSFLNVLVHRLPIMLERQWQAEAREVLALPSEAQAPRFDLFLPPSQCPHCAHRIR
PWENIPVVSYLALRGRCSACQARISPRYPLVELACGALTLFAAWHLGFTVAALALMVLSWGLLAMSLIDIEHHLLPDALV
LPLLWLGLIANAFELFVPLEDALWGTVAGYLSLWSVFWVFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTLLLSSLLG
AVIGLIMLRLQRKQASTPIPFGPYLAIAGWIALLWGGQITTSYLKYSGF

Nucleotide

• Length: 870 bp

>NTDB_id=542167 JYG36_RS04890 WP_213603239.1 1023631..1024500(-) (pilD) [Pseudomonas sp. SORT22]
ATGAACCTGTTGAACACCCTGGCCAGCCAGCCACTGATGTACCTGAGCTTCGCCCTGTTGCTCGGGCTGATTGTCGGCAG
TTTTCTCAATGTGCTGGTGCATCGCCTGCCGATCATGCTCGAACGCCAATGGCAGGCCGAAGCCCGTGAGGTACTGGCGT
TGCCCAGCGAGGCACAAGCGCCGCGCTTCGACCTGTTTTTACCGCCCTCGCAATGCCCGCATTGCGCCCACCGCATTCGC
CCGTGGGAAAACATACCGGTGGTGAGTTACCTGGCCTTGCGCGGGCGCTGTTCCGCTTGCCAGGCGCGCATCAGCCCGCG
CTATCCGCTGGTGGAGCTTGCCTGCGGGGCGCTGACGCTGTTTGCCGCCTGGCATCTGGGTTTTACCGTCGCGGCCCTGG
CGCTGATGGTGCTGAGTTGGGGCCTGCTGGCCATGAGCTTGATCGATATCGAGCACCATCTGTTGCCCGATGCCCTGGTG
CTGCCGTTGTTGTGGTTGGGGCTGATCGCCAATGCCTTTGAACTGTTCGTCCCGCTGGAGGATGCCTTGTGGGGCACGGT
GGCCGGTTACCTGAGCCTGTGGTCGGTGTTCTGGGTGTTCAAGCTGGTCACCGGCAAAGAGGGCATGGGCTATGGCGATT
TCAAGTTGCTGGCCATGCTCGGCGCCTGGGGCGGCTGGCAGATTTTGCCGCTGACCTTGCTGTTGTCGTCGCTGCTGGGG
GCGGTGATCGGCCTGATTATGCTGCGCCTGCAGCGCAAGCAGGCGAGCACGCCGATCCCCTTTGGTCCCTATCTGGCCAT
TGCGGGCTGGATCGCGCTGCTCTGGGGTGGTCAAATAACCACTTCCTATCTGAAATATTCCGGATTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.286	96.886	0.526
pilD	Vibrio campbellii strain DS40M4	49.301	98.962	0.488
pilD	Acinetobacter baumannii D1279779	48.905	94.81	0.464
pilD	Acinetobacter nosocomialis M2	48.175	94.81	0.457
pilD	Neisseria gonorrhoeae MS11	48.627	88.235	0.429