Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JYB86_RS01730 Genome accession   NZ_CP070997
Coordinates   365334..366560 (-) Length   408 a.a.
NCBI ID   WP_127801106.1    Uniprot ID   A0A7S6VQ11
Organism   Acinetobacter indicus strain LYS68A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 360334..371560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JYB86_RS01705 (JYB86_01705) - 361739..362062 (+) 324 WP_005181767.1 pyrimidine/purine nucleoside phosphorylase -
  JYB86_RS01710 (JYB86_01710) rlmB 362168..362920 (+) 753 WP_205779322.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  JYB86_RS01715 (JYB86_01715) - 362938..363858 (+) 921 WP_016659657.1 DMT family transporter -
  JYB86_RS01720 (JYB86_01720) coaE 363855..364463 (-) 609 WP_075175011.1 dephospho-CoA kinase -
  JYB86_RS01725 (JYB86_01725) pilD 364474..365334 (-) 861 WP_005181774.1 prepilin peptidase Machinery gene
  JYB86_RS01730 (JYB86_01730) pilC 365334..366560 (-) 1227 WP_127801106.1 type II secretion system F family protein Machinery gene
  JYB86_RS01735 (JYB86_01735) pilB 366591..368297 (-) 1707 WP_005181778.1 type IV-A pilus assembly ATPase PilB Machinery gene
  JYB86_RS01740 (JYB86_01740) tpiA 368587..369378 (+) 792 WP_005181780.1 triose-phosphate isomerase -
  JYB86_RS01745 (JYB86_01745) secG 369392..369721 (+) 330 WP_005181783.1 preprotein translocase subunit SecG -
  JYB86_RS01770 (JYB86_01770) rimP 370590..371114 (+) 525 WP_205779323.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44881.33 Da        Isoelectric Point: 9.9079

>NTDB_id=542076 JYB86_RS01730 WP_127801106.1 365334..366560(-) (pilC) [Acinetobacter indicus strain LYS68A]
MAVKKAQMMPTFIYEGIDRKGAKLKGELPARNMALAKVTLRKQGITIKTIRQKKKNILEGLMKKKVSTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFSSFGADLPAFTKMVVNMSQWTQKYWFVLIIVVGFAIA
AFLEAKKRSKKFRDLLDKAALRAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVTDKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGILVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=542076 JYB86_RS01730 WP_127801106.1 365334..366560(-) (pilC) [Acinetobacter indicus strain LYS68A]
ATGGCTGTCAAAAAAGCACAGATGATGCCCACCTTTATTTATGAAGGGATTGACCGCAAAGGGGCAAAACTTAAAGGGGA
ACTGCCAGCACGTAATATGGCGCTGGCCAAGGTCACGTTGCGCAAGCAAGGGATCACCATCAAAACCATCCGCCAGAAGA
AGAAAAATATTCTTGAAGGCTTGATGAAGAAAAAAGTCTCGACCCTGGACATCACGATTTTTACCCGCCAGCTGGCGACC
ATGATGAAAGCCGGTGTACCGCTGGTGCAAAGCTTTGAAATTGTGGCTGAAGGTCTGGAAAACCCGGCCATGCGTGAAGT
GGTATTGGGGATTAAAGGCGAAGTCGAAGGGGGCAATACCTTTGCTGGTGCACTGCGTAAATATCCGCAACATTTCGATA
ATCTGTTTTGCTCGCTGGTTGAATCGGGTGAACAGTCGGGTGCTCTAGAAACTATGCTGGACCGGGTAGCGATCTATAAA
GAAAAGAGCGAATTACTCAAACAGAAAATCAAGAAAGCCATGAAATACCCGGCAACGGTGATTGTGGTGGCAGTGATTGT
CACCATTATCCTGATGGTCAAAGTGGTACCGGTGTTTGAAGAACTCTTCAGCTCTTTTGGTGCCGACTTACCGGCCTTCA
CCAAGATGGTGGTGAATATGTCGCAGTGGACCCAGAAATACTGGTTTGTGCTGATTATTGTGGTCGGCTTTGCGATTGCA
GCTTTTCTGGAAGCCAAGAAACGCAGCAAGAAATTCCGTGACCTGCTGGACAAAGCCGCCCTGAGAGCACCAATTTTTGG
TGATCTGGTGTATAAGGCGATTATCGCGCGTTATAGTCGTACCCTGGCCACCACCTTTGCTGCCGGTGTTCCCTTAATTG
ATGCACTGGAATCCACTGCCGGCGCCACCAACAACGTGGTTTATGAAGAAGCAGTAATGAAAATCCGTGAAGATGTCGCC
ACCGGTCAGCAGTTGCAGTTTGCCATGCGGGTCACGGATAAATTCCCATCCATGGCCGTGCAGATGGTTGCGATTGGTGA
AGAATCCGGTGCGCTGGATGCGATGCTGGATAAAGTCGCTACTCACTACGAAAACGAAGTCGATAACGCCGTCGATGGCT
TAACCTCGATGATGGAACCACTGATTATGGCCGTTCTCGGGATTCTGGTCGGCGGTCTGGTGGTCGCGATGTATCTCCCA
ATCTTCCAAATGGGCTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S6VQ11

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.48

100

0.885
  pilC Acinetobacter baylyi ADP1

83.824

100

0.838
  pilC Pseudomonas stutzeri DSM 10701

60.688

99.755

0.605
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria gonorrhoeae MS11

47.99

97.549

0.468
  pilG Neisseria meningitidis 44/76-A

47.99

97.549

0.468
  pilC Vibrio cholerae strain A1552

43.137

100

0.431
  pilC Vibrio campbellii strain DS40M4

42.574

99.02

0.422